View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16112_low_58 (Length: 244)

Name: NF16112_low_58
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16112_low_58
NF16112_low_58
[»] chr3 (5 HSPs)
chr3 (18-223)||(10945058-10945263)
chr3 (70-160)||(10967469-10967559)
chr3 (169-244)||(10967313-10967388)
chr3 (83-162)||(13397706-13397785)
chr3 (160-244)||(13397855-13397939)
[»] chr1 (4 HSPs)
chr1 (82-162)||(828112-828192)
chr1 (26-67)||(226406-226447)
chr1 (26-67)||(42637712-42637753)
chr1 (26-63)||(46042379-46042416)
[»] chr8 (1 HSPs)
chr8 (26-67)||(33177436-33177477)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 10945263 - 10945058
Alignment:
Q  18 ttttagacggtttagaaacttgtgaaacttatgattttgcaagttaatttagtaacacgattctgtctctgcctaaaatgtttctgagctctacttgtct 117  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10945263 ttttagacggtttagagacttgtgaaacttataattttgcaagttaatttagtaacacgattctgtctctgcctaaaatgtttctgagctctacttgtct 10945164  T
Q  118 ttaacacttgcaactcacttatatttcctctctcactgcatttcctaaaacgtggagcaattgcacatcacttgtggatttgtacttagaaaattgctgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10945163 ttaacacttgcaactcacttatatttcctctctcactgcatttcctaaaacgtggagcaattgcacatcacttgtggatttgtacttagaaaattgctgt 10945064  T
Q  218 gatgga 223  Q
    ||||||    
T  10945063 gatgga 10945058  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 10967559 - 10967469
Alignment:
Q  70 taacacgattctgtctctgcctaaaatgtttctgagctctacttgtctttaacacttgcaactcacttatatttcctctctcactgcattt 160  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  10967559 taacacgattctgtctctgcctaaagtgtttctgagctatacttgtcttcaacacttgcaactcatttatatttcctctctcactgcattt 10967469  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 10967388 - 10967313
Alignment:
Q  169 gtggagcaattgcacatcacttgtggatttgtacttagaaaattgctgtgatggacttacctcctttcaactgaat 244  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10967388 gtggagcaattacacatcacttgtggatttgtacttagaaaattgttgtgatggacttacctcctttcaactgaat 10967313  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 13397706 - 13397785
Alignment:
Q  83 tctctgcctaaaatgtttctgagctctacttgtctttaacacttgcaactcacttatatttcctctctcactgcatttcc 162  Q
    ||||| ||||| |||||| ||||||| ||||||||| |||||||| | |||| |||||||||||||||||||||||||||    
T  13397706 tctcttcctaacatgtttatgagctccacttgtcttcaacacttggatctcatttatatttcctctctcactgcatttcc 13397785  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 13397855 - 13397939
Alignment:
Q  160 tcctaaaacgtggagcaattgcacatcacttgtggatttgtacttagaaaattgctgtgatggacttacctcctttcaactgaat 244  Q
    |||| |||| |||||||||| |||||||||||||  |||  | ||| ||||||| ||||||  ||||||||||||||||||||||    
T  13397855 tcctgaaacatggagcaattacacatcacttgtgactttagagttaaaaaattgttgtgattcacttacctcctttcaactgaat 13397939  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 828112 - 828192
Alignment:
Q  82 gtctctgcctaaaatgtttctgagctctacttgtctttaacacttgcaactcacttatatttcctctctcactgcatttcc 162  Q
    |||||| ||||||||||| |||||||| ||||||||| |||||||  | ||||| ||||||   |||||| ||||||||||    
T  828112 gtctctacctaaaatgttactgagctccacttgtcttcaacacttagatctcacatatattgattctctcgctgcatttcc 828192  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 226406 - 226447
Alignment:
Q  26 ggtttagaaacttgtgaaacttatgattttgcaagttaattt 67  Q
    ||||||||  ||| ||||||||||||||||||||||||||||    
T  226406 ggtttagagtcttatgaaacttatgattttgcaagttaattt 226447  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 42637753 - 42637712
Alignment:
Q  26 ggtttagaaacttgtgaaacttatgattttgcaagttaattt 67  Q
    ||||||||  ||| ||||||||||||||||||||||||||||    
T  42637753 ggtttagagtcttatgaaacttatgattttgcaagttaattt 42637712  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 46042379 - 46042416
Alignment:
Q  26 ggtttagaaacttgtgaaacttatgattttgcaagtta 63  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  46042379 ggtttagaatcttatgaaacttatgattttgcaagtta 46042416  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 33177477 - 33177436
Alignment:
Q  26 ggtttagaaacttgtgaaacttatgattttgcaagttaattt 67  Q
    ||||||||  ||| ||||||||||||||||||||||||||||    
T  33177477 ggtttagagtcttatgaaacttatgattttgcaagttaattt 33177436  T

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