View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_low_59 (Length: 242)
Name: NF16112_low_59
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_low_59 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold1880 (2 HSPs) |
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| [»] scaffold1462 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 18315566 - 18315782
Alignment:
| Q |
26 |
atgcttaaccctattcagaataaacagtgtaaaccctagataactctaactactttcattcacgttaaacaaaggcgattcaaagcataacttaaatccc |
125 |
Q |
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| T |
18315566 |
atgcttaaccctattcagaataaacagtgtaaaccctagataactcttactactttcattcacgttaaacaaaggcgattcaaagcataacttaaatccc |
18315665 |
T |
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| Q |
126 |
caaggtttgtatattctctcgtttcttagttatcttaattatactctaaacattactttgcctaattttgtgattctctctaattaggagaactttcttc |
225 |
Q |
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| T |
18315666 |
caaggtttgtatattctctcgtttcttagttatcttaattgtactctaaacattactttgcctaattttgtgattctctctaattaggagaactttcttc |
18315765 |
T |
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| Q |
226 |
atctgaataataatcat |
242 |
Q |
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| T |
18315766 |
atctgaataataatcat |
18315782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 18312147 - 18312192
Alignment:
| Q |
51 |
agtgtaaaccctagataactctaactactttcattcacgttaaaca |
96 |
Q |
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| T |
18312147 |
agtgttaaccctagataaatcttactacttacattcacgttaaaca |
18312192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1880 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold1880
Description:
Target: scaffold1880; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 44 - 195
Target Start/End: Complemental strand, 1107 - 957
Alignment:
| Q |
44 |
aataaacagtgtaaaccctagataactctaactactttcattcacgttaaacaaaggcgattcaaagcataacttaaatccccaaggtttgtatattctc |
143 |
Q |
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| T |
1107 |
aataaaaagtgtgaaccctagataactcttaccactttcattcacgttaaagaaagccgattcaaaccacaacttaa-tccccaaggtctgtatattttc |
1009 |
T |
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| Q |
144 |
tcgtttcttagttatcttaattatactctaaacattactttgcctaattttg |
195 |
Q |
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| T |
1008 |
tcgtctcttacttttcttaattgtaatctaaacattactttgcctaattttg |
957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1880; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 918 - 867
Alignment:
| Q |
191 |
ttttgtgattctctctaattaggagaactttcttcatctgaataataatcat |
242 |
Q |
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| T |
918 |
ttttgtgattctctctaatttggagaactttcttcatttgaataataatcat |
867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1462 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1462
Description:
Target: scaffold1462; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 740 - 807
Alignment:
| Q |
128 |
aggtttgtatattctctcgtttcttagttatcttaattatactctaaacattactttgcctaattttg |
195 |
Q |
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| T |
740 |
aggtctgtatattctctcgtttcttacttttctaaattgtaatccaaacattgctttgccaaattttg |
807 |
T |
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