View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16112_low_6 (Length: 627)

Name: NF16112_low_6
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16112_low_6
NF16112_low_6
[»] chr6 (6 HSPs)
chr6 (19-568)||(3884319-3884868)
chr6 (302-417)||(14771710-14771825)
chr6 (578-614)||(3884886-3884922)
chr6 (374-455)||(13191576-13191657)
chr6 (284-332)||(2681189-2681237)
chr6 (300-332)||(2720552-2720584)
[»] chr8 (8 HSPs)
chr8 (374-455)||(25147538-25147619)
chr8 (300-404)||(25148020-25148124)
chr8 (284-333)||(10729659-10729708)
chr8 (284-333)||(34308452-34308501)
chr8 (284-333)||(34308908-34308957)
chr8 (284-332)||(10844588-10844636)
chr8 (300-332)||(31283640-31283672)
chr8 (374-410)||(32292444-32292480)
[»] chr5 (1 HSPs)
chr5 (300-446)||(1821917-1822063)
[»] scaffold0022 (1 HSPs)
scaffold0022 (374-457)||(69878-69961)
[»] scaffold0071 (1 HSPs)
scaffold0071 (300-329)||(45164-45193)
[»] chr4 (8 HSPs)
chr4 (300-333)||(7678605-7678638)
chr4 (374-455)||(50399050-50399131)
chr4 (376-417)||(53391927-53391968)
chr4 (300-408)||(1645732-1645840)
chr4 (476-532)||(4185648-4185704)
chr4 (300-332)||(27029402-27029434)
chr4 (284-332)||(44471292-44471340)
chr4 (300-332)||(53996098-53996130)
[»] chr3 (6 HSPs)
chr3 (300-329)||(15381258-15381287)
chr3 (300-329)||(15392183-15392212)
chr3 (300-329)||(15396493-15396522)
chr3 (300-329)||(15410629-15410658)
chr3 (300-329)||(15417045-15417074)
chr3 (300-332)||(16811050-16811082)
[»] chr7 (1 HSPs)
chr7 (284-332)||(13122478-13122526)
[»] chr2 (1 HSPs)
chr2 (284-332)||(29804807-29804855)
[»] chr1 (4 HSPs)
chr1 (300-332)||(20060329-20060361)
chr1 (284-332)||(52250331-52250379)
chr1 (284-332)||(52250668-52250716)
chr1 (284-332)||(52251005-52251053)


Alignment Details
Target: chr6 (Bit Score: 486; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 19 - 568
Target Start/End: Original strand, 3884319 - 3884868
Alignment:
Q  19 attattgggttgattaagctaatttgaaccttttcaaaactaattctaggtgtcaccgatcattgtgtcatcgaagcaattacttcatccctttctttac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3884319 attattgggttgattaagctaatttgaaccttttcaaaactaattctaggtgtcaccgatcattgtgtcatggaagcaattacttcatccctttctttac 3884418  T
Q  119 aagtaatggtggtgtataccatgataatggttatagcgattgaggtaacatcttaaacgatttgaagtattgttgattgatctataaaccaacacaaann 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||       
T  3884419 aagtaatggtggtgtataccatgataatggttatagcgattgaggtaacatctcaaacgatttgaagtattgttgattgatctataaaccaacacaattt 3884518  T
Q  219 nnnnnnagcgtgttttgctcctactctaacgatttttagaaaaccttataaaagatcatcaatcgcaaaattgtttcaaaccaagcacacttaaatgtgg 318  Q
          ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3884519 ttttttagcgtgttttgcttctactctaacgatttttagaaaaccttataaaaggtcatcaatcgcaaaattgtttcaaaccaagcacacttaaatgtgg 3884618  T
Q  319 agttcttatggaatataccaccaaaaaagatatacatattgttgatattatcaagaccaaacaattcttattagcatttcttcaaccatgcaatctcatt 418  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3884619 agttcttatgaaatagaccacaaaaaaagatatacatattgttgatattatcaagaccaaacaattcttattagcatttcttcaaccatgcaatctcatt 3884718  T
Q  419 accacacaatcttaggatctctctcattttgatgtgaattcgagtctttcatatgcttagaagcaactaggagccgctcattttcatgtcttgtgcactg 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3884719 accacacaatcttaggatctctctcattttgatgtgaattcgagtctttcatttgcttagaagcaactaggagccgctcattttcatgtcttgtgcactg 3884818  T
Q  519 acgatcacttccctaatgaccaccaacttccacttggttcgtttcgtaat 568  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3884819 gcgatcacttccctaatgaccaccaacttccacttggttcgtttcgtaat 3884868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 302 - 417
Target Start/End: Original strand, 14771710 - 14771825
Alignment:
Q  302 agcacacttaaatgtggagttcttatggaatataccaccaaaaaagatatacatattgttgatattatcaagaccaaacaattcttattagcatttcttc 401  Q
    ||||||||||| |||||||||||||||||||| |  ||||||||  ||||  || ||||||||||    |  |||||||||||||||| ||  || ||||    
T  14771710 agcacacttaactgtggagttcttatggaatagattaccaaaaagaatatggatcttgttgatataggtagtaccaaacaattcttataagtcttccttc 14771809  T
Q  402 aaccatgcaatctcat 417  Q
    ||||||||| ||||||    
T  14771810 aaccatgcagtctcat 14771825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 614
Target Start/End: Original strand, 3884886 - 3884922
Alignment:
Q  578 cttccacttggttcgtccctgaaccacatcatactga 614  Q
    |||||||||||||||||| ||||||||||||||||||    
T  3884886 cttccacttggttcgtccgtgaaccacatcatactga 3884922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 455
Target Start/End: Original strand, 13191576 - 13191657
Alignment:
Q  374 accaaacaattcttattagcatttcttcaaccatgcaatctcattaccacacaatcttaggatctctctcattttgatgtga 455  Q
    |||||||||||||||| ||| || ||||||||||||| || |||  | ||| | |||||||||| ||||||||  |||||||    
T  13191576 accaaacaattcttataagccttccttcaaccatgcagtcccatacctacatagtcttaggatccctctcattccgatgtga 13191657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 2681189 - 2681237
Alignment:
Q  284 caaaattgtttcaaaccaagcacacttaaatgtggagttcttatggaat 332  Q
    |||||||||| ||||  |||||| ||||| |||||||||||||||||||    
T  2681189 caaaattgttccaaattaagcacgcttaattgtggagttcttatggaat 2681237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 300 - 332
Target Start/End: Original strand, 2720552 - 2720584
Alignment:
Q  300 caagcacacttaaatgtggagttcttatggaat 332  Q
    ||||||||||||| |||||||||||||||||||    
T  2720552 caagcacacttaactgtggagttcttatggaat 2720584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 374 - 455
Target Start/End: Complemental strand, 25147619 - 25147538
Alignment:
Q  374 accaaacaattcttattagcatttcttcaaccatgcaatctcattaccacacaatcttaggatctctctcattttgatgtga 455  Q
    |||||||||||||||| ||| || ||||||||||||| ||||||  | ||||| |||||||||||||||||||  |||||||    
T  25147619 accaaacaattcttataagccttccttcaaccatgcagtctcatacctacacagtcttaggatctctctcattccgatgtga 25147538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 300 - 404
Target Start/End: Complemental strand, 25148124 - 25148020
Alignment:
Q  300 caagcacacttaaatgtggagttcttatggaatataccaccaaaaaagatatacatattgttgatattatcaagaccaaacaattcttattagcatttct 399  Q
    ||||||| ||||| |||||||||||||||||||   | ||| ||||  |||| ||| ||||||||||    ||||||||||||||||||| ||| || ||    
T  25148124 caagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaatatgcatcttgttgatataggtaagaccaaacaattcttataagccttcct 25148025  T
Q  400 tcaac 404  Q
    |||||    
T  25148024 tcaac 25148020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 10729659 - 10729708
Alignment:
Q  284 caaaattgtttcaaaccaagcacacttaaatgtggagttcttatggaata 333  Q
    |||||||| ||||| |||||||| ||||| |||||||| |||||||||||    
T  10729659 caaaattgcttcaagccaagcacccttaattgtggagtccttatggaata 10729708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 34308452 - 34308501
Alignment:
Q  284 caaaattgtttcaaaccaagcacacttaaatgtggagttcttatggaata 333  Q
    |||||||| | ||| |||||||| ||||| ||||||||||||||||||||    
T  34308452 caaaattgctccaagccaagcacgcttaagtgtggagttcttatggaata 34308501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 34308908 - 34308957
Alignment:
Q  284 caaaattgtttcaaaccaagcacacttaaatgtggagttcttatggaata 333  Q
    |||||||| | ||| |||||||| ||||| ||||||||||||||||||||    
T  34308908 caaaattgctccaagccaagcacgcttaactgtggagttcttatggaata 34308957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 10844588 - 10844636
Alignment:
Q  284 caaaattgtttcaaaccaagcacacttaaatgtggagttcttatggaat 332  Q
    |||||||| |||||  ||||||| ||||| |||||||||||||||||||    
T  10844588 caaaattgcttcaagtcaagcacgcttaactgtggagttcttatggaat 10844636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 300 - 332
Target Start/End: Original strand, 31283640 - 31283672
Alignment:
Q  300 caagcacacttaaatgtggagttcttatggaat 332  Q
    ||||||||||||| |||||||||||||||||||    
T  31283640 caagcacacttaactgtggagttcttatggaat 31283672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 374 - 410
Target Start/End: Complemental strand, 32292480 - 32292444
Alignment:
Q  374 accaaacaattcttattagcatttcttcaaccatgca 410  Q
    |||||||||||||||| |||||| |||||||||||||    
T  32292480 accaaacaattcttataagcattccttcaaccatgca 32292444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 300 - 446
Target Start/End: Complemental strand, 1822063 - 1821917
Alignment:
Q  300 caagcacacttaaatgtggagttcttatggaatataccaccaaaaaagatatacatattgttgatattatcaagaccaaacaattcttattagcatttct 399  Q
    ||||||| |||||||||||||||||||||||||   | ||||||||  | || ||| ||||||||||    |  |||||||||||||||| ||| || ||    
T  1822063 caagcacgcttaaatgtggagttcttatggaatgggctaccaaaaagaagatgcatcttgttgatataggtagtaccaaacaattcttataagccttcct 1821964  T
Q  400 tcaaccatgcaatctcattaccacacaatcttaggatctctctcatt 446  Q
    ||||||||||| ||||||  |  ||| | |||| |||||||||||||    
T  1821963 tcaaccatgcagtctcatacctgcacgaccttaagatctctctcatt 1821917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 457
Target Start/End: Original strand, 69878 - 69961
Alignment:
Q  374 accaaacaattcttattagcatttcttcaaccatgcaatctcattaccacacaatcttaggatctctctcattttgatgtgaat 457  Q
    ||||||||||| |||| |||||| ||||||| ||||| ||||||  |  || | |||||||||| |||||||| ||||||||||    
T  69878 accaaacaattattataagcattccttcaacgatgcagtctcatacctgcatagtcttaggatccctctcattatgatgtgaat 69961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 329
Target Start/End: Original strand, 45164 - 45193
Alignment:
Q  300 caagcacacttaaatgtggagttcttatgg 329  Q
    ||||||||||||||||||||||||||||||    
T  45164 caagcacacttaaatgtggagttcttatgg 45193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 333
Target Start/End: Original strand, 7678605 - 7678638
Alignment:
Q  300 caagcacacttaaatgtggagttcttatggaata 333  Q
    ||||||||||||| ||||||||||||||||||||    
T  7678605 caagcacacttaactgtggagttcttatggaata 7678638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 455
Target Start/End: Original strand, 50399050 - 50399131
Alignment:
Q  374 accaaacaattcttattagcatttcttcaaccatgcaatctcattaccacacaatcttaggatctctctcattttgatgtga 455  Q
    |||||||||||||||| ||| || ||||||||||| ||||||||  | ||||  ||| |||||| ||||||||  |||||||    
T  50399050 accaaacaattcttataagccttccttcaaccatgtaatctcatacctacacggtctcaggatccctctcattccgatgtga 50399131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 417
Target Start/End: Complemental strand, 53391968 - 53391927
Alignment:
Q  376 caaacaattcttattagcatttcttcaaccatgcaatctcat 417  Q
    ||||||||| |||| |||||||||||||||||||| ||||||    
T  53391968 caaacaatttttataagcatttcttcaaccatgcagtctcat 53391927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 300 - 408
Target Start/End: Original strand, 1645732 - 1645840
Alignment:
Q  300 caagcacacttaaatgtggagttcttatggaatataccaccaaaaaagatatacatattgttgatattatcaagaccaaacaattcttattagcatttct 399  Q
    ||||||| ||||| |||||||||||||||||||   | ||||||||  | || ||| ||||||||||    || |||||||||||||||| ||  || ||    
T  1645732 caagcacgcttaactgtggagttcttatggaatgggctaccaaaaagaagatgcatcttgttgatataggtaataccaaacaattcttataagtcttcct 1645831  T
Q  400 tcaaccatg 408  Q
    |||||||||    
T  1645832 tcaaccatg 1645840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 4185704 - 4185648
Alignment:
Q  476 tagaagcaactaggagccgctcattttcatgtcttgtgcactgacgatcacttccct 532  Q
    |||||||  ||| ||||| |||||||||||||||||||||  |||||||||| ||||    
T  4185704 tagaagctgctatgagccactcattttcatgtcttgtgcaacgacgatcactcccct 4185648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 300 - 332
Target Start/End: Complemental strand, 27029434 - 27029402
Alignment:
Q  300 caagcacacttaaatgtggagttcttatggaat 332  Q
    ||||||||||||| |||||||||||||||||||    
T  27029434 caagcacacttaactgtggagttcttatggaat 27029402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 44471292 - 44471340
Alignment:
Q  284 caaaattgtttcaaaccaagcacacttaaatgtggagttcttatggaat 332  Q
    |||||||| | |||| ||||||| ||||| |||||||||||||||||||    
T  44471292 caaaattgctccaaatcaagcacgcttaactgtggagttcttatggaat 44471340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 300 - 332
Target Start/End: Original strand, 53996098 - 53996130
Alignment:
Q  300 caagcacacttaaatgtggagttcttatggaat 332  Q
    ||||||||||||| |||||||||||||||||||    
T  53996098 caagcacacttaactgtggagttcttatggaat 53996130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 329
Target Start/End: Complemental strand, 15381287 - 15381258
Alignment:
Q  300 caagcacacttaaatgtggagttcttatgg 329  Q
    ||||||||||||||||||||||||||||||    
T  15381287 caagcacacttaaatgtggagttcttatgg 15381258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 329
Target Start/End: Complemental strand, 15392212 - 15392183
Alignment:
Q  300 caagcacacttaaatgtggagttcttatgg 329  Q
    ||||||||||||||||||||||||||||||    
T  15392212 caagcacacttaaatgtggagttcttatgg 15392183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 329
Target Start/End: Complemental strand, 15396522 - 15396493
Alignment:
Q  300 caagcacacttaaatgtggagttcttatgg 329  Q
    ||||||||||||||||||||||||||||||    
T  15396522 caagcacacttaaatgtggagttcttatgg 15396493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 329
Target Start/End: Complemental strand, 15410658 - 15410629
Alignment:
Q  300 caagcacacttaaatgtggagttcttatgg 329  Q
    ||||||||||||||||||||||||||||||    
T  15410658 caagcacacttaaatgtggagttcttatgg 15410629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 329
Target Start/End: Complemental strand, 15417074 - 15417045
Alignment:
Q  300 caagcacacttaaatgtggagttcttatgg 329  Q
    ||||||||||||||||||||||||||||||    
T  15417074 caagcacacttaaatgtggagttcttatgg 15417045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 300 - 332
Target Start/End: Complemental strand, 16811082 - 16811050
Alignment:
Q  300 caagcacacttaaatgtggagttcttatggaat 332  Q
    |||||||||||||||||| ||||||||||||||    
T  16811082 caagcacacttaaatgtgaagttcttatggaat 16811050  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 13122478 - 13122526
Alignment:
Q  284 caaaattgtttcaaaccaagcacacttaaatgtggagttcttatggaat 332  Q
    |||||||| | |||| ||||||| ||||| |||||||||||||||||||    
T  13122478 caaaattgctccaaatcaagcacgcttaactgtggagttcttatggaat 13122526  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 29804855 - 29804807
Alignment:
Q  284 caaaattgtttcaaaccaagcacacttaaatgtggagttcttatggaat 332  Q
    |||||||| |||||  ||||||| ||||| |||||||||||||||||||    
T  29804855 caaaattgcttcaagtcaagcacgcttaactgtggagttcttatggaat 29804807  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 300 - 332
Target Start/End: Original strand, 20060329 - 20060361
Alignment:
Q  300 caagcacacttaaatgtggagttcttatggaat 332  Q
    ||||||||||||| |||||||||||||||||||    
T  20060329 caagcacacttaactgtggagttcttatggaat 20060361  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 52250379 - 52250331
Alignment:
Q  284 caaaattgtttcaaaccaagcacacttaaatgtggagttcttatggaat 332  Q
    |||||||| |||||  ||||||| ||||| |||||||||||||||||||    
T  52250379 caaaattgcttcaagtcaagcacgcttaactgtggagttcttatggaat 52250331  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 52250716 - 52250668
Alignment:
Q  284 caaaattgtttcaaaccaagcacacttaaatgtggagttcttatggaat 332  Q
    |||||||| |||||  ||||||| ||||| |||||||||||||||||||    
T  52250716 caaaattgcttcaagtcaagcacgcttaactgtggagttcttatggaat 52250668  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 52251053 - 52251005
Alignment:
Q  284 caaaattgtttcaaaccaagcacacttaaatgtggagttcttatggaat 332  Q
    |||||||| |||||  ||||||| ||||| |||||||||||||||||||    
T  52251053 caaaattgcttcaagtcaagcacgcttaactgtggagttcttatggaat 52251005  T

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