View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_low_61 (Length: 239)
Name: NF16112_low_61
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_low_61 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 679016 - 679236
Alignment:
| Q |
1 |
cttaatgtacaatatgattaatttagcactaacaacacataaagttaccacgagaataataacatgttaatttctttagaaaattgatgactaacatgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
679016 |
cttaatgtacaatatgattaatttagcactaacaacacataaagttaccacgagaataataacatgttaatttctttagaaaattgatgactaacatgta |
679115 |
T |
|
| Q |
101 |
tggtgggaagccctatagagcagtcgactaggatgagcactaagccacatacccaagcactcatatataaggataaacatgttgacattctgttaacaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
679116 |
tggtgggaagccctatagagcagtcgactaggatgagcactaagccacatacccaagcactcatatataaggataaacatgttgacattctgttaacaac |
679215 |
T |
|
| Q |
201 |
ctcaccttttacctgtctagg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
679216 |
ctcaccttttacctgtctagg |
679236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 750823 - 751043
Alignment:
| Q |
1 |
cttaatgtacaatatgattaatttagcactaacaacacataaagttaccacgagaataataacatgttaatttctttagaaaattgatgactaacatgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
750823 |
cttaatgtacaatatgattaatttagcactaacaacacataaagttaccacgagaataataacatgttaatttctttagaaaattgatgactaacatgta |
750922 |
T |
|
| Q |
101 |
tggtgggaagccctatagagcagtcgactaggatgagcactaagccacatacccaagcactcatatataaggataaacatgttgacattctgttaacaac |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
750923 |
tggtgggaagccctatagagcagtcgactaggatgagcactaagccacatacccaagcactcatatataaggataaacatgttgacattctgttaacaac |
751022 |
T |
|
| Q |
201 |
ctcaccttttacctgtctagg |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
751023 |
ctcaccttttacctgtctagg |
751043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 2632945 - 2632745
Alignment:
| Q |
4 |
aatgtacaatatgattaatttagcactaacaacacataaagttaccacgagaataataa-catgttaatttctttagaaaattgatgactaacatgtatg |
102 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||| ||||||||| || | |||||| ||||||||||| |||| ||||||||||||||||||||||| |
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| T |
2632945 |
aatgtacaatatgattaattcagcactagcaacaca--aagttaccaagaaattaataaacatgttaatttgtttaaaaaattgatgactaacatgtatg |
2632848 |
T |
|
| Q |
103 |
gtgggaagccctatagagcagtcgactaggatgagcactaagccacatacccaagcactcatatataaggataaacatgttgacattctgttaacaacct |
202 |
Q |
| |
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| ||||||| ||| ||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
2632847 |
g-gggaagctctacagagcagtcaactagaatgagcactaagccacatacccaagcactc----gcaaggataaacatgtttccattctgttaacaacct |
2632753 |
T |
|
| Q |
203 |
cacctttt |
210 |
Q |
| |
|
|||||||| |
|
|
| T |
2632752 |
cacctttt |
2632745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 9564666 - 9564816
Alignment:
| Q |
1 |
cttaatgtacaatatgattaatttagcactaacaacacataaagttaccacgagaataataacatgttaatttctttagaaaattgatgactaacatgta |
100 |
Q |
| |
|
|||| ||||| ||||||||||||||||| ||||||||||||||||| ||| || | |||||| |||||||||||||||||||||| |||||||||||||| |
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|
| T |
9564666 |
cttattgtactatatgattaatttagcattaacaacacataaagttcccaagaaattaataaaatgttaatttctttagaaaatttatgactaacatgta |
9564765 |
T |
|
| Q |
101 |
tggtgggaagccctatagagcagtcgactaggatgagcactaagccacata |
151 |
Q |
| |
|
||| ||||||| ||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
9564766 |
tggagggaagctctatagagcagtcaactaggatgaacactaagccacata |
9564816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 7317354 - 7317545
Alignment:
| Q |
12 |
atatgattaatttagcactaacaacacataaagttaccacgagaataataacatgttaatttctttagaaaattgatgactaacatgtatggtgggaagc |
111 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||| ||| || | |||||||||||||| |||||||||| |||||||||||||||| || | |||||| |
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|
| T |
7317354 |
atatgattatttcagcactagaaacacataaagttgccaagaaattaataacatgttaaattctttagaagattgatgactaacatgaatagagggaagt |
7317453 |
T |
|
| Q |
112 |
cctatagagcagtcgactaggatgagcactaagccacatacccaagcactcatatataaggataaacatgttgacattctgttaacaacctcacct |
207 |
Q |
| |
|
|| ||||| | | ||||||||||| |||||| ||| || ||||||||| |||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
7317454 |
tgtacagagcgggcaactaggatgagtactaagtcacctatccaagcact----gataatgataaacatgttgatattctgttaacaacctcacct |
7317545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 136
Target Start/End: Original strand, 667951 - 668075
Alignment:
| Q |
12 |
atatgattaatttagcactaacaacacataaagttaccacgagaataataacatgttaatttctttagaaaattgatgactaacatgtatggtgggaagc |
111 |
Q |
| |
|
||||||||| || ||||||||||||||||||| || ||| || | |||||| ||||||| || ||||||||||||||||||||||||||||| ||||||| |
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|
| T |
667951 |
atatgattatttcagcactaacaacacataaaattgccaagaaattaataaaatgttaaattgtttagaaaattgatgactaacatgtatggagggaagc |
668050 |
T |
|
| Q |
112 |
cctatagagcagtcgactaggatga |
136 |
Q |
| |
|
||| ||||||| |||||||||| |
|
|
| T |
668051 |
tctacagagcaggaaactaggatga |
668075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 2642529 - 2642618
Alignment:
| Q |
4 |
aatgtacaatatgattaatttagcactaacaacacataaagttaccacgagaataataacatgttaatttctttagaaaattgatgacta |
93 |
Q |
| |
|
||||||| |||||||||||| ||||||| ||| |||||||||||| || | ||||||||||||||||||||||||||| | ||||||| |
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|
| T |
2642529 |
aatgtactatatgattaattcagcactagcaaggaataaagttaccaagaaattaataacatgttaatttctttagaaaactaatgacta |
2642618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 7339748 - 7339829
Alignment:
| Q |
30 |
taacaacacataaagttaccacgagaataataacatgttaatttctttagaaaattgatgactaacatgtatggtgggaagc |
111 |
Q |
| |
|
|||||||||||||||||| | || | |||||| |||||| |||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
7339748 |
taacaacacataaagttaataagaaattaataaaatgttactttctttagaaaattgatgactaatatgtatggagggaagc |
7339829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 2650058 - 2650136
Alignment:
| Q |
12 |
atatgattaatttagcactaacaacacataaagttaccacgagaataataacatgttaatttctttagaaaattgatga |
90 |
Q |
| |
|
||||||| |||| ||||| | ||| ||||||||||||| || | ||||||||||| || ||||||||||||||||||| |
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|
| T |
2650058 |
atatgataaattaagcaccagcaaggcataaagttaccaagaaattaataacatgtaaacttctttagaaaattgatga |
2650136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 9564819 - 9564851
Alignment:
| Q |
178 |
catgttgacattctgttaacaacctcacctttt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
9564819 |
catgttgacattctgttaacaacctcacctttt |
9564851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 1554 - 1360
Alignment:
| Q |
12 |
atatgattaatttagcactaacaacacataaagttaccacgagaataataacatgttaatttctttagaaaattgatgactaacatgtatggtgggaagc |
111 |
Q |
| |
|
|||||||||||| ||| ||| |||| || ||||||||| || | |||||| ||||||| ||||||||||||||||| ||||||| |||| | ||||||| |
|
|
| T |
1554 |
atatgattaattccgcaataa-aacatatgaagttaccaagaaattaataatatgttaaattctttagaaaattgattactaacaggtatagagggaagc |
1456 |
T |
|
| Q |
112 |
cctatagagcagtc-gactaggatgagcactaagccacatacccaagcactcatatataaggataaacatgttgacattctgttaacaacctcacctttt |
210 |
Q |
| |
|
||| | || | | ||||||||||||||||||||||||| |||| || | ||| |||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
1455 |
tctagaaagtgggcaaactaggatgagcactaagccacatatgcaagtaccc----gtaatgataaatatgttgacattctgttaacaaccacacctttt |
1360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 2289907 - 2289947
Alignment:
| Q |
59 |
ataacatgttaatttctttagaaaattgatgactaacatgt |
99 |
Q |
| |
|
|||| |||||||||||||||||||||| || |||||||||| |
|
|
| T |
2289907 |
ataatatgttaatttctttagaaaattaattactaacatgt |
2289947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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