View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16112_low_68 (Length: 225)
Name: NF16112_low_68
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_low_68 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 41610374 - 41610590
Alignment:
| Q |
16 |
aatatcatatatagcaaagagattcattcattcatattgaacttacaagccaacatcacgcacgagtccaactcctaaacttagaacaataatataacgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41610374 |
aatatcatatatagcaaagagattcattcattcatattgaacttacaagccaacatcacgcacgagtccaactcctaaactaagaacaataatataacgc |
41610473 |
T |
|
| Q |
116 |
a----atatgcaatttacaaatgtttttacttgcgagaatgttaagagttgtctctagcatattcat---ccagtttctttatcaaactcgacaaaatcc |
208 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41610474 |
aatatatatgcaatttacaaatgtttttacttgggagaatgttaagagttgtctctagcatattcatccaccagtttctttatcaaactcgacaaaatcc |
41610573 |
T |
|
| Q |
209 |
aataaaacaatcctgct |
225 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
41610574 |
aataaaacaatcctgct |
41610590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University