View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16112_low_70 (Length: 224)
Name: NF16112_low_70
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_low_70 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7990632 - 7990409
Alignment:
| Q |
1 |
gatgagacggaggtcaatgtagatcggtgaggtgatgccagatttgagcttgaagttgccgaatttcacagctgatatctcatggagttgaagaacaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7990632 |
gatgagacggaggtcaatgtagatcggtgaggtgatgccagatttgagcttgaagttgccgaatttcacagctgatatctcatggagttgaagaacaaga |
7990533 |
T |
|
| Q |
101 |
gattccaccaatgatgatgacgccatttcctcacaaataatattcccttttgagtgttttacagggattgttgtagaaataacctgtgttattcagtgtg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7990532 |
gattccaccaatgatgatgacgccatttcctcacaaataatattcccttttgagtgtgttacagggattgttgtagaaataacctgtgttattcagtgcg |
7990433 |
T |
|
| Q |
201 |
cattatactcatcaattgaaaaat |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
7990432 |
cattatactcatcaattgaaaaat |
7990409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 5032451 - 5032229
Alignment:
| Q |
2 |
atgagacggaggtcaatgtagatcggtgaggtgatgccagatttgagcttgaagttgccgaatttcacagctgatatctcatggagttgaagaacaagag |
101 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5032451 |
atgagacggaggtcaatgtagattggtgaggagatgccagatttgagcttgaagttgccgaatttcacagctgatatctcatggagttgaagaacaagag |
5032352 |
T |
|
| Q |
102 |
attccaccaatgatgatgacgccatttcctcacaaataatattcccttttgagtgttttacagggattgttgtagaaataacctgtgttattcagtgtgc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5032351 |
attccaccaatgatgatgacgccatttcctcacaaataaatatcccttttgagtgtgttgcagggaatgttgtagaaataacctgtgttattcagtgtgc |
5032252 |
T |
|
| Q |
202 |
attatactcatcaattgaaaaat |
224 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
5032251 |
attatactcatcaattgaaaaat |
5032229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 14241871 - 14241959
Alignment:
| Q |
8 |
cggaggtcaatgtagatcggtgaggtgatgccagatttgagcttgaagttgccgaatttcacagctgatatctcatggagttgaagaac |
96 |
Q |
| |
|
|||||||| || || || ||||||| |||||| ||||| ||||||||||| || ||||| |||||||| || |||||||||| |||||| |
|
|
| T |
14241871 |
cggaggtctatataaattggtgaggagatgccggatttaagcttgaagtttccaaatttgacagctgagatttcatggagtttaagaac |
14241959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 40616183 - 40616228
Alignment:
| Q |
179 |
ataacctgtgttattcagtgtgcattatactcatcaattgaaaaat |
224 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
40616183 |
ataaccagtgttattcagtgcgcattatactcatcaattaaaaaat |
40616228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University