View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16113_high_1_N (Length: 383)
Name: NF16113_high_1_N
Description: NF16113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16113_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 11119450 - 11119817
Alignment:
| Q |
1 |
aacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11119450 |
aacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcgt |
11119549 |
T |
|
| Q |
101 |
tgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcatttcctaaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| |
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| T |
11119550 |
tgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataaaatcagcaacatttataccatttcctaaatt |
11119649 |
T |
|
| Q |
201 |
caccttaggttcaacatacaattcaacatcacacttcttatcacgagcataattagacattgtagttgcatcagtatcattcctgaatggcttaaggtct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||| |
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| T |
11119650 |
caccttaggttcaacatacaattcaacatcacacttcttatcacgagcataattagacattgcagttgcatcagtatcattactgaatggcttgaggtct |
11119749 |
T |
|
| Q |
301 |
tcatccaatgaaccactctcatgtttccaccataaccttactaacccttcatcaaaagtatcatccat |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119750 |
tcatccaatgaaccactctcatgtttccaccataaccttactaacccttcatcaaaagtatcatccat |
11119817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 12 - 365
Target Start/End: Original strand, 12205970 - 12206311
Alignment:
| Q |
12 |
aaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcattgtctgcttca |
111 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
12205970 |
aaccccagccatcctctcttcttcactatcattaaagtgtgcgcctttaattgaatcaccatcatcactactaacatcttcatcatcactgtctgcttca |
12206069 |
T |
|
| Q |
112 |
ccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcatttcctaaattcaccttaggtt |
211 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12206070 |
ccaacattgccttcaacttaatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcaccttagg-- |
12206167 |
T |
|
| Q |
212 |
caacatacaattcaacatcacacttcttatcacgagcataattagacattgtagttgcatcagtatcattcctgaatggcttaaggtcttcatccaatga |
311 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||| | ||||||||||||||| |
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| T |
12206168 |
----------ttcaacatcacagttcttatcacgagcataatcagacattaaggttgcatcagtatcattcctgattggcttgacgtcttcatccaatga |
12206257 |
T |
|
| Q |
312 |
accactctcatgtttccaccataaccttactaacccttcatcaaaagtatcatc |
365 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12206258 |
accactctcatgtttccaccataaccttactaacccttcatcaaaagtatcatc |
12206311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 32741154 - 32741521
Alignment:
| Q |
1 |
aacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcat |
100 |
Q |
| |
|
|||| |||||||||| |||||||| ||||||||||||| |||| |||| |||||||||| ||| ||||||||||||||||||||||||||||| |||| |
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| T |
32741154 |
aacccatcatcaaccgcagccatcttctcttcttcactatcatcaaagcgtgtgcctttaattaaatcaccatcatcactactaacatctccaccatcga |
32741253 |
T |
|
| Q |
101 |
tgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcatttcctaaatt |
200 |
Q |
| |
|
||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||||||||| |
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| T |
32741254 |
tgtctacttcaccaacatcgccttcaatttcatccgccactacaccctttcccttttgttccccaataacatcagcaacaattatagcatttcctaaatt |
32741353 |
T |
|
| Q |
201 |
caccttaggttcaacatacaattcaacatcacacttcttatcacgagcataattagacattgtagttgcatcagtatcattcctgaatggcttaaggtct |
300 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
32741354 |
caccttaggttcaacatacaattcaacatcgcacttgttatcacgagcataatcagacattgcagttgcatcagtatcattcctgaatggcttgaggtct |
32741453 |
T |
|
| Q |
301 |
tcatccaatgaaccactctcatgtttccaccataaccttactaacccttcatcaaaagtatcatccat |
368 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||| |
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| T |
32741454 |
tcatccaatgaaccactctcatgtttccaccatagctttactaactattcatcaaaagtatcatccat |
32741521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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