View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16113_high_8 (Length: 307)

Name: NF16113_high_8
Description: NF16113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16113_high_8
NF16113_high_8
[»] chr4 (1 HSPs)
chr4 (16-307)||(23713984-23714275)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 307
Target Start/End: Complemental strand, 23714275 - 23713984
Alignment:
Q  16 atccaaataattagacttcctactgtaaatttaacaagtttggaggaattatattgccatgattcaattcaaatgcacatgaaagctaagtagtaaactc 115  Q
    ||||||||||||||||||||| |||||||||||  ||||||| ||||| ||||||||||| ||||||||||| ||||||| ||||| ||| |||||||||    
T  23714275 atccaaataattagacttcctgctgtaaatttattaagtttgtaggaactatattgccataattcaattcaactgcacataaaagcaaagcagtaaactc 23714176  T
Q  116 aaatagttggtaagaactcaaagggtgtcaaattacctcagagatattgtcatctattcgatcagagtgtggagatggaagagagtaaggactgcctttc 215  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23714175 aaatagttggtaagaaatcaaagggtgtcaaattacctcagatatattgtcatctattcgatcagagtgtggagatggaagagagtaaggactgcctttc 23714076  T
Q  216 aatatgtttttctccctttccctgttcgcgtccaacaaggcctgctctaataaaactttagcctctggattaagctcgctgattatcttcaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23714075 aatatgtttttctccctttccctgttcgcgtccaacaaggcctgctctaataaaactttagcctctggattaagctcgctgattatcttcaa 23713984  T

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