View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16113_low_1 (Length: 852)
Name: NF16113_low_1
Description: NF16113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16113_low_1 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 696; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 17 - 852
Target Start/End: Original strand, 3151251 - 3152085
Alignment:
| Q |
17 |
aatatctatggtcacaggcatgcaaagaaatgctgctgcagccaagaaaactccacggaattttatttccagcagatgaaactgaacattgatgatacac |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |||| |
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| T |
3151251 |
aatatctatggtcacaggcatgcaaagaaatgctgctgcagccaagaaa-ctccacggaaatttatttccagcagatgaaactaaacattgatgacacac |
3151349 |
T |
|
| Q |
117 |
caatggagtacttcttctgtagtgattgggagtgtactagaagagaaagtgagaatcttttgagcactatgaggaatcaaaaatgctattgtggtggaat |
216 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| || | |
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| T |
3151350 |
caattgagtacttcttctgtagtgattgggagtgtactagaagagaaagtgggagtcttttgagcactatgaggaatcaaaaatgttattgtggtagagt |
3151449 |
T |
|
| Q |
217 |
actggacaaagatgtagctccagaacatttgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatcattttgtgatgcct |
316 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3151450 |
actggacaaagatgtggctccagaacatctgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatctttttgtgatgcct |
3151549 |
T |
|
| Q |
317 |
aatgttttggcaacagttgtacatctacatcagaagcttggaattgataccaatgatactattgtcgaacaaactgtggaaataagcaagaaagaggtat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3151550 |
aatgttttggcaacagttgtacatctacatcagaagcttggaattgataccaatgacactattgtcgaacaaactgtggaaataagcaagaaagaggtat |
3151649 |
T |
|
| Q |
417 |
gtttttctatcttctatataatctgtgattttgnnnnnnnnccttgtcatttgatgtttcatctcttgcttttgtaggtagttgatcttctcaaattatc |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3151650 |
gtttttctatcttctatataatctgtgattttgttttttttccttgtcatttgatgtttcatctcttgcttttgtaggtagttgatcttctcaaattatc |
3151749 |
T |
|
| Q |
517 |
attgttctcaaactcccctttgacagatttaatcttaaagaagaatcaatttgttgataaattttaccaaagcaatcaaaaaatttgaatttggaaatgg |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3151750 |
attgttctcaaactcccctttgacagatttaatcttaaagaagaatcaatttgttgataaattttaccaaagcaatcaaaaaatttgaatttggaaatgg |
3151849 |
T |
|
| Q |
617 |
agagaaaccatctgaaaggggtaggtatatggttgtgaaactaatggtaagaaaatcaactagagagtttctatttgctgaagcacaagacgattttatt |
716 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |
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|
| T |
3151850 |
agagaaaccatctgaaaggggtaggtatatggttgtgaaactaatggtaagaaaatcaactagagagtttctatttaccgaagcacaagaagattttatt |
3151949 |
T |
|
| Q |
717 |
gacattgttttcagttttctcaccttacctttgggagcagtagtgcatatgcttcaagtaatctcttctttaaattgcattgataatttatacaacatca |
816 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| | || |
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| T |
3151950 |
gactttgttttcagttttctcaccttacctttgggagcagtagtgcatatgcttcaaggaatctcttctttaaattgcactgataatttatacaaaagca |
3152049 |
T |
|
| Q |
817 |
ttacaccgttgattcccagaagatatttaatttcac |
852 |
Q |
| |
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| ||| |||| |||||||||||||||||| |||| |
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|
| T |
3152050 |
tgacagagttgtgtcccagaagatatttaatctcac |
3152085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 702 - 811
Target Start/End: Original strand, 15381066 - 15381175
Alignment:
| Q |
702 |
caagacgattttattgacattgttttcagttttctcaccttacctttgggagcagtagtgcatatgcttcaagtaatctcttctttaaattgcattgata |
801 |
Q |
| |
|
||||| |||||||| ||| ||||||| |||||||| ||||| || || |||| ||| ||||||||||||||| | |||||| |||| |||||||||| |
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| T |
15381066 |
caagatgattttatcgactttgtttttagttttctaaccttccccttaggaggagtgttgcatatgcttcaaggattctctttgttaagctgcattgata |
15381165 |
T |
|
| Q |
802 |
atttatacaa |
811 |
Q |
| |
|
|||||||||| |
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|
| T |
15381166 |
atttatacaa |
15381175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 3e-29; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 665 - 811
Target Start/End: Original strand, 21200350 - 21200496
Alignment:
| Q |
665 |
aagaaaatcaactagagagtttctatttgctgaagcacaagacgattttattgacattgttttcagttttctcaccttacctttgggagcagtagtgcat |
764 |
Q |
| |
|
||||||||||||| ||||| || | |||||||||||| ||| ||||||||| || || ||||||||||||| || || |||||||||| ||| ||||| |
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| T |
21200350 |
aagaaaatcaactggagagattttgtttgctgaagcaagagatgattttattaactttattttcagttttctaactttccctttgggaggagtgttgcat |
21200449 |
T |
|
| Q |
765 |
atgcttcaagtaatctcttctttaaattgcattgataatttatacaa |
811 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
21200450 |
atgcttcaaggtttctcttctttaaactgcattgataatttatacaa |
21200496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 708 - 808
Target Start/End: Original strand, 24284913 - 24285013
Alignment:
| Q |
708 |
gattttattgacattgttttcagttttctcaccttacctttgggagcagtagtgcatatgcttcaagtaatctcttctttaaattgcattgataatttat |
807 |
Q |
| |
|
|||||||||||| || |||| |||||||| ||||| || ||||| | ||| ||||||||||||||| | |||||||||||| |||||||||||||||| |
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| T |
24284913 |
gattttattgactttatttttagttttctaaccttccccttggggggagtgttgcatatgcttcaaggattctcttctttaagctgcattgataatttat |
24285012 |
T |
|
| Q |
808 |
a |
808 |
Q |
| |
|
| |
|
|
| T |
24285013 |
a |
24285013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 21194706 - 21194788
Alignment:
| Q |
272 |
gaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatctacatcagaagct |
354 |
Q |
| |
|
||||||||| | ||||| ||||||||||||| || |||||||||||||| ||| | ||||||| |||| |||| ||| ||||| |
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|
| T |
21194706 |
gaaactgctgcatttattatttccgacgatctttgtgtgatgcctaatgattttggaacagttatacaactacttcaaaagct |
21194788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 244 - 354
Target Start/End: Original strand, 21199931 - 21200041
Alignment:
| Q |
244 |
tttgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatcta |
343 |
Q |
| |
|
|||||| ||||||| || |||||| | ||||||||| | ||||| ||||| ||||||| || |||||||||||||||||| | |||||| |||| ||| |
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|
| T |
21199931 |
tttgagcttaggaagcggttttgttaaggaaactgctgcatttattatttcagacgatctttatgtgatgcctaatgtttttgggacagttatacaacta |
21200030 |
T |
|
| Q |
344 |
catcagaagct |
354 |
Q |
| |
|
| ||| ||||| |
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|
| T |
21200031 |
cttcacaagct |
21200041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 650 - 810
Target Start/End: Original strand, 24238894 - 24239054
Alignment:
| Q |
650 |
tgtgaaactaatggtaagaaaatcaactagagagtttctatttgctgaagcacaagacgattttattgacattgttttcagttttctcaccttacctttg |
749 |
Q |
| |
|
||||||| || |||| |||| |||||| |||||| || | | ||||||||| | || |||||| ||| || |||| ||||||||||| || || || |
|
|
| T |
24238894 |
tgtgaaagtactggtgagaagatcaacaagagaggttttgtatgctgaagctgaggaagattttgcggactttcttttgagttttctcactttcccctta |
24238993 |
T |
|
| Q |
750 |
ggagcagtagtgcatatgcttcaagtaatctcttctttaaattgcattgataatttataca |
810 |
Q |
| |
|
|||| ||| ||||||||||||||| | | |||||| ||| ||||||||||||||||||| |
|
|
| T |
24238994 |
ggaggagtgttgcatatgcttcaaggattttcttctataagctgcattgataatttataca |
24239054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 244 - 356
Target Start/End: Original strand, 24284442 - 24284554
Alignment:
| Q |
244 |
tttgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatcta |
343 |
Q |
| |
|
||||||| ||||||||||||||| | | ||||| || || ||||| ||||| || |||| | |||||||||||||||||| | ||||||| ||| ||| |
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|
| T |
24284442 |
tttgagtctaggaaatggctttgctaaggaaaccgccacatttataatttctgatgatcttactgtgatgcctaatgtttttggaacagttataccacta |
24284541 |
T |
|
| Q |
344 |
catcagaagcttg |
356 |
Q |
| |
|
| ||| ||||||| |
|
|
| T |
24284542 |
cttcaaaagcttg |
24284554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 546
Target Start/End: Complemental strand, 24232036 - 24231981
Alignment:
| Q |
491 |
taggtagttgatcttctcaaattatcattgttctcaaactcccctttgacagattt |
546 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||| |||||||||| ||||| |
|
|
| T |
24232036 |
taggtagttgatcttctcaagttatcattaatctcaaagacccctttgaccgattt |
24231981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 811
Target Start/End: Original strand, 21195104 - 21195250
Alignment:
| Q |
665 |
aagaaaatcaactagagagtttctatttgctgaagcacaagacgattttattgacattgttttcagttttctcaccttacctttgggagcagtagtgcat |
764 |
Q |
| |
|
||||||||||||| |||| || | |||||||||||| || ||||||||| || || ||||||||||||| || | || || |||| ||| ||||| |
|
|
| T |
21195104 |
aagaaaatcaactggagatattttgtttgctgaagcaggcgatgattttattaactttattttcagttttctaactctccccttaggaggagtgttgcat |
21195203 |
T |
|
| Q |
765 |
atgcttcaagtaatctcttctttaaattgcattgataatttatacaa |
811 |
Q |
| |
|
|||||| ||| |||||||| |||| |||| |||||||||||||| |
|
|
| T |
21195204 |
atgcttgaaggtttctcttctctaaacagcatcgataatttatacaa |
21195250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 685 - 811
Target Start/End: Complemental strand, 24231846 - 24231720
Alignment:
| Q |
685 |
ttctatttgctgaagcacaagacgattttattgacattgttttcagttttctcaccttacctttgggagcagtagtgcatatgcttcaagtaatctcttc |
784 |
Q |
| |
|
|||| |||| ||||||| ||| |||||||||||| ||||||| |||||||| || || || || |||| ||| ||||||||||||||| | | || || |
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|
| T |
24231846 |
ttctgtttgttgaagcaggagatgattttattgactttgtttttagttttctaacatttcccttaggaggagtgttgcatatgcttcaaggattttcgtc |
24231747 |
T |
|
| Q |
785 |
tttaaattgcattgataatttatacaa |
811 |
Q |
| |
|
||||| |||||||||| || ||||| |
|
|
| T |
24231746 |
tttaagcagcattgataacttgtacaa |
24231720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 272 - 422
Target Start/End: Complemental strand, 24232270 - 24232120
Alignment:
| Q |
272 |
gaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatctacatcagaagcttggaattgataccaatg |
371 |
Q |
| |
|
|||| |||||||||||||||||| || |||| || ||| |||||||||||||| | | || | || |||||| ||| ||||||||| | || || | || |
|
|
| T |
24232270 |
gaaaatgctacttttatcatttctgatgatctttgtgttatgcctaatgtttttggagcaagtttaaatctacttcaaaagcttggagtcgagactattg |
24232171 |
T |
|
| Q |
372 |
atactattgtcgaacaaactgtggaaataagcaagaaagaggtatgttttt |
422 |
Q |
| |
|
|| |||||| |||||| |||| || || | ||||||||||| ||| |||| |
|
|
| T |
24232170 |
atgctattgaggaacaagctgttgacatcaacaagaaagaggcatgctttt |
24232120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 665 - 810
Target Start/End: Original strand, 10989588 - 10989735
Alignment:
| Q |
665 |
aagaaaatcaactagagagtttctatttgctgaagcacaagacgattttattgacattgttttcagttttctcaccttacctttg--ggagcagtagtgc |
762 |
Q |
| |
|
||||||||||||| |||||||| | |||| ||||| | | |||||||||||| || ||||||||||||| || || || || |||| ||| || |
|
|
| T |
10989588 |
aagaaaatcaactggagagtttttgtttgttgaaggaggggtagattttattgactttcttttcagttttcttacatttcccttataggaggagtgttgt |
10989687 |
T |
|
| Q |
763 |
atatgcttcaagtaatctcttctttaaattgcattgataatttataca |
810 |
Q |
| |
|
||||||||||| | |||||||||||| ||||||||||||||||||| |
|
|
| T |
10989688 |
gtatgcttcaaggattctcttctttaagctgcattgataatttataca |
10989735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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