View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16113_low_2 (Length: 414)
Name: NF16113_low_2
Description: NF16113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16113_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 52727157 - 52727556
Alignment:
| Q |
1 |
aagtactccttcactatatgcaatcccctctctaccacttctggtggtggtgaagtgagagggttcccttccacactcaacttttgaagcttgttaagac |
100 |
Q |
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| T |
52727157 |
aagtactccttcactatatgcaatcccctctctacgacttctggtggtggtgaagtgagagggttcccttccacactcaacttttgaagcttgttaagac |
52727256 |
T |
|
| Q |
101 |
aaccaatggaatcaggcaaggacctgatcttattgtagctaacatcaagttcagtgagggacaagagaagtcctacagagtatggaatagaagtcaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52727257 |
aaccaatggaatcaggcaaggacctgatcttattgtagctaacatcaagttcagtgagggacaagagaagtcctactgagtatggaatagaagtcaaata |
52727356 |
T |
|
| Q |
201 |
ctgaaagttctgactcacgtttaggatttcaaggttgatgagattctcaagatcttccgggagagacctaagacagttcagtcttgcgtctaaaaccttt |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52727357 |
ctgaaagttctgactcacatttaggatttcaaggttgatgagattctcaagatcctccggaagagacctaagacagttcagtcttgcgtctaaaaccttt |
52727456 |
T |
|
| Q |
301 |
agaggtgtgaggtgagatgtggagcgtggaaggaagatcagcttgttagagttgactgataannnnnnnaggtttattagctcataccctattgtctctg |
400 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
52727457 |
agagatgtgaggtgagatgtggagcgtggaaggaagatcagcttgttagagttgactgataatttttttaggtttattagctcataccctattgtgtctg |
52727556 |
T |
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