View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16114_low_2 (Length: 468)
Name: NF16114_low_2
Description: NF16114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16114_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 25412509 - 25412783
Alignment:
| Q |
1 |
taatttctacattctcttaatagaatcacaattgacaaggtactcattaaagtttgacaccgtaaattcatttaccttaaatgcactttcaaattcaaat |
100 |
Q |
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| T |
25412509 |
taatttctacattctcttaatagaatcacaattgacaaggtactcattaaagtttgacaccgtaaattcatttaccttaaatgcactttcaaattcaaat |
25412608 |
T |
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| Q |
101 |
cctaaattccctctagtacatgatcttgtctctaacacaatatttctcaactactaaaaaattcttttcccaagaaataaacaaaatataaaaccatcat |
200 |
Q |
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| T |
25412609 |
cctaaattccctctagtacatgatcttgtctctaacacaatatttctcaactactaaaaaattattttcccaaaaaataaacaaaatataaaaccatcat |
25412708 |
T |
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| Q |
201 |
gatcacaccatcgacaataatgaaatggagagcttcatgtttttcgccattcaagttgcctttaggtataaactg |
275 |
Q |
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| T |
25412709 |
gatcacaccatcgacaataatgaaatggagagcttcatgtttttcgccattcaagttgcctttaggtataaactg |
25412783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 398 - 451
Target Start/End: Original strand, 25412918 - 25412971
Alignment:
| Q |
398 |
tcctcacaactatatatgcaggtgatcatgtatctaattcattcgcacaaattg |
451 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25412918 |
tccttacaactatatatgcaggtgatcatgtatctaattcattcgcacaaattg |
25412971 |
T |
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