View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16114_low_3 (Length: 401)
Name: NF16114_low_3
Description: NF16114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16114_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 37704489 - 37704859
Alignment:
| Q |
1 |
tgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaa |
100 |
Q |
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| T |
37704489 |
tgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaa |
37704588 |
T |
|
| Q |
101 |
aagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataagat |
200 |
Q |
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| T |
37704589 |
aagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataagat |
37704688 |
T |
|
| Q |
201 |
aacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataacattaattgtatttagaatcggagacttag |
300 |
Q |
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| T |
37704689 |
aacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataacattaattgtatttagaatcggagacttag |
37704788 |
T |
|
| Q |
301 |
acttcttcaaatgtacatactttaaagagcaaattacgatacttttaagttatttaattataacaaatcgg |
371 |
Q |
| |
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| T |
37704789 |
acttcttcaaatgtacatactttaaagagcaaattacgagacttttaagttatttaattataacaaatcgg |
37704859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 37699010 - 37699349
Alignment:
| Q |
1 |
tgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaa |
100 |
Q |
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| T |
37699010 |
tgagtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgacatttggcaacaatattaattcagtaacaatcatagaa |
37699109 |
T |
|
| Q |
101 |
aagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtg---ata |
196 |
Q |
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||||||||||||||||||||||||||| ||||| ||| ||| |||||||| ||||||||||||||| ||||||||||||||||| ||||||||| ||| |
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| T |
37699110 |
aagtttggtgttcattaaactaaataacatcttggaaaaccaagacttttcgaacgtaattagcactaaagttggaatcttattgcaagttgtgataata |
37699209 |
T |
|
| Q |
197 |
agataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaat------aacattaattgtatttagaatc |
290 |
Q |
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| T |
37699210 |
agataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctaaaatgaagaaaataataacaacattaattgtatttagcaac |
37699309 |
T |
|
| Q |
291 |
ggagacttagacttcttcaaatgtacatactttaaagagc |
330 |
Q |
| |
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| T |
37699310 |
ggagacttagacttcttcaactgaacagactttaaagagc |
37699349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 31 - 270
Target Start/End: Original strand, 37437584 - 37437823
Alignment:
| Q |
31 |
ggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatat |
130 |
Q |
| |
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|||||||||||||||| | |||| |||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || |
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| T |
37437584 |
ggggtgcttttcataaccgtatagtgatatgacaattggcaacaatattaattcaataacaatcatagaaaagtttggtgttcattaaactaaataacat |
37437683 |
T |
|
| Q |
131 |
cttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtg---ataagataacaaattcatttaagtagcaatcac |
226 |
Q |
| |
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| T |
37437684 |
attggaagaccaagacttttcgaacgtaattagc----aagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatcag |
37437779 |
T |
|
| Q |
227 |
agtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataa |
270 |
Q |
| |
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| T |
37437780 |
aatgagtaatttgcttaaaaatacacctgaaatgaagaaaataa |
37437823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 37698732 - 37698864
Alignment:
| Q |
87 |
taaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacca-gactttttgaacgtaatta----gcacgaaagttggaatctta |
181 |
Q |
| |
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|||| |||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||||||| |||||||||| |||| ||||||||||||||| |
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| T |
37698732 |
taacaatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttttttaacgtaattaattagcactaaagttggaatctta |
37698831 |
T |
|
| Q |
182 |
tttcaagttgtgataagataacaaattcattta |
214 |
Q |
| |
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| T |
37698832 |
ttgcaagttgtgataagataacaaattcattta |
37698864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 94 - 330
Target Start/End: Complemental strand, 16841109 - 16840857
Alignment:
| Q |
94 |
catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgt |
192 |
Q |
| |
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|||| |||||||||||||| | |||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
16841109 |
catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaattagcac-taagttggaatcttattgcaagttgt |
16841011 |
T |
|
| Q |
193 |
g------ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaa----atacacctgaaatgaagaaaat------aacattaa |
276 |
Q |
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| T |
16841010 |
gatattaataagataacaaattcatttaagtaccaatcacaatgaataatttgcttaaaaatatatacacctgaaatgaagaaaataataacaacattaa |
16840911 |
T |
|
| Q |
277 |
ttgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc |
330 |
Q |
| |
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||||||||||| |||||||||||||||| |||| | | ||||||||||||||| |
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|
| T |
16840910 |
atgtatttagaagcggagacttagacttcgtcaactatccatactttaaagagc |
16840857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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