View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16115_high_2 (Length: 441)

Name: NF16115_high_2
Description: NF16115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16115_high_2
NF16115_high_2
[»] chr3 (2 HSPs)
chr3 (18-426)||(40972311-40972740)
chr3 (196-300)||(40960946-40961050)
[»] chr5 (1 HSPs)
chr5 (196-308)||(30905798-30905910)


Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Complemental strand, 40972740 - 40972311
Alignment:
Q  18 tatacttctctggaactatttataagaaaaaattagtgtatttggaccaaattttataccaaatacattagctttttcgtatacaagagcatattgcaga 117  Q
    |||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40972740 tatactcctctgatactatttataagaaaaaattagtgtatttggaccaaattttataccaaatacattagctttttcgtatataagagcatattgcaga 40972641  T
Q  118 tagaaatgatggcataggttttggagtttcgaaacaataagttagtt-aaaattagggtttgatttataattttattgaacctgcatagctttctcctgt 216  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40972640 tagaaatgatgacataggttttggagtttcgaaacaataagttagtttaaaattagggtttgatttataaatttattgaacctgcatagctttctcctgt 40972541  T
Q  217 cagaaacaaaccccttgatctataggaaggaaacttctcgtaccattttaacatgaacaaaagtgtatcattagctgtcaaaaagaaattaaggaattat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40972540 cagaaacaaaccccttgatctataggaaggaaacttctcgtaccattttaacatgaacaaaagtgtatcattagctgtcaaaaagaaattaaggaattat 40972441  T
Q  317 atatatccatgcctggtaaaacaaataaactgcatttataaattttctcattt--------------------ataaattagttcacataaagtttaatt 396  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||                    |||||||||||||||||||||||||||    
T  40972440 atatgtccatgcctggtaaaacaaataaactgcatttataaattttctcattttttccatagataaacaccgcataaattagttcacataaagtttaatt 40972341  T
Q  397 caatacctgtggaggcgtcatcatagttgt 426  Q
    ||||||||||||||| ||||||||||||||    
T  40972340 caatacctgtggaggtgtcatcatagttgt 40972311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 40960946 - 40961050
Alignment:
Q  196 acctgcatagctttctcctgtcagaaacaaaccccttgatctataggaaggaaacttctcgtaccattttaacatgaacaaaagtgtatcattagctgtc 295  Q
    ||||||||| |||||||| || ||||||||   ||| ||| | || ||||||||||||||||||||||| | ||||||||||||  | ||||| |||| |    
T  40960946 acctgcataactttctccggtaagaaacaacttcctcgatttgtatgaaggaaacttctcgtaccatttcagcatgaacaaaagcatgtcattggctgcc 40961045  T
Q  296 aaaaa 300  Q
    |||||    
T  40961046 aaaaa 40961050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 30905798 - 30905910
Alignment:
Q  196 acctgcatagctttctcctgtcagaaacaaaccccttgatctataggaaggaaacttctcgtaccattttaacatgaacaaaagtgtatcattagctgtc 295  Q
    |||||||||||||||||| || ||||||||  | || ||| | || | ||||||||||||| ||||||| |  | |||| ||||  ||||||| |||| |    
T  30905798 acctgcatagctttctccggtaagaaacaacgctctggatttgtatgtaggaaacttctcgaaccatttcaggaagaacgaaagcatatcattggctgcc 30905897  T
Q  296 aaaaagaaattaa 308  Q
    ||||| |||||||    
T  30905898 aaaaacaaattaa 30905910  T

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