View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16115_high_3 (Length: 432)
Name: NF16115_high_3
Description: NF16115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16115_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 71 - 244
Target Start/End: Original strand, 30831416 - 30831587
Alignment:
| Q |
71 |
aaccaatcctctttatcgaatgaccaccacatgcattattgatttgaaagagagaaatctattttgtttgtatcttggttgaacacacactctctttgtg |
170 |
Q |
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| T |
30831416 |
aacctatcctctttatcgaatgaccaccacatgcattattgatttgaaagag--aaatctattttgtttgtatcttggttgaacacacactctctttgtg |
30831513 |
T |
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| Q |
171 |
gtctcaattataaataaaactactttcgtctatggtgaattttggcgatttagggttatgctaacgtgtatcct |
244 |
Q |
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| T |
30831514 |
gtctcaattataaataaaactacttttgtctatggtgaattttcgcgatttagaattatgctaacgtgtgtcct |
30831587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 30831311 - 30831368
Alignment:
| Q |
1 |
tgaatttttccatcttcccctttgttaatattttgttttatcaagatgtgtctttgtta |
59 |
Q |
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| T |
30831311 |
tgaatttttccatcttccc-tttgttaatattttattttatcaagatgtgtctttgtta |
30831368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 402
Target Start/End: Original strand, 30831716 - 30831755
Alignment:
| Q |
363 |
aaccaatgttctaaagacgttgtttagcattttccataaa |
402 |
Q |
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| T |
30831716 |
aaccaatgttctaaagacgttgtttaacattttccataaa |
30831755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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