View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16115_high_4 (Length: 278)
Name: NF16115_high_4
Description: NF16115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16115_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 73 - 268
Target Start/End: Original strand, 48288481 - 48288673
Alignment:
| Q |
73 |
ctttctttcttccttgacatggatcaaattcaattcattttatgagtatatatgtgtagtttgtgatatatgtaagttcattttatgagcaatgtccttc |
172 |
Q |
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| T |
48288481 |
ctttctttcttccttgacatggatcaaatgcaa---attttatgagtatatatgtgtagtttgtgatatatgtaagttcattttatgagcaatgtccttc |
48288577 |
T |
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| Q |
173 |
tcttggtccaaaaagaaaattgacattgtcaattacttcaaattagtctattnnnnnnntaatgttgtaaatcgtcataatcctagtaggcctttg |
268 |
Q |
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| T |
48288578 |
tcttggtccaaaaagaaaattgacattgtcaattacttcaaattagtctattaagaaaataatgttgtaaatcgtcataatcctggtaggcctttg |
48288673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 48288291 - 48288333
Alignment:
| Q |
20 |
agatcttgacatgtgatatatcttgacaaatatgttgtatctg |
62 |
Q |
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| T |
48288291 |
agatcttgacatgtgatatatcttgacaaatatgttgtatctg |
48288333 |
T |
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