View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16115_high_6 (Length: 239)
Name: NF16115_high_6
Description: NF16115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16115_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 48632885 - 48633086
Alignment:
| Q |
15 |
gaagaaccagacaaacaaggcatagcaggtcaggaatctgctcatattgacatccgaaaatggtctcatcatcacaaatactatacagcttgtgtgatat |
114 |
Q |
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| T |
48632885 |
gaagaaccagacaaacaaggcatagcaggtcaggaatctgctcatattgacatccgaaaatggtctcatcatcacaaatactataccgcttgtgtgatat |
48632984 |
T |
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| Q |
115 |
tctattctattcactttaaggttaaaaaccaaacttctacaactccattgaagtaagcatagtataagtgactgtgattacaatataaaaatacaaatag |
214 |
Q |
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| T |
48632985 |
t-----ctattcactttaaggttaaaaaccaaacttctacaactccattgaagtaagcatagtataagtgactgtgattacaatataaaaatacaaatag |
48633079 |
T |
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| Q |
215 |
agcatat |
221 |
Q |
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| T |
48633080 |
agcatat |
48633086 |
T |
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