View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16115_high_8 (Length: 230)

Name: NF16115_high_8
Description: NF16115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16115_high_8
NF16115_high_8
[»] chr1 (5 HSPs)
chr1 (1-203)||(28719899-28720101)
chr1 (201-230)||(2352307-2352336)
chr1 (201-230)||(14281588-14281617)
chr1 (201-230)||(23398078-23398107)
chr1 (201-230)||(38830481-38830510)
[»] scaffold1089 (1 HSPs)
scaffold1089 (7-147)||(514-660)
[»] chr8 (3 HSPs)
chr8 (195-229)||(2339412-2339446)
chr8 (202-230)||(2229191-2229219)
chr8 (202-230)||(25848088-25848116)
[»] chr6 (6 HSPs)
chr6 (1-50)||(14435591-14435640)
chr6 (201-230)||(22880916-22880945)
chr6 (201-230)||(22898851-22898880)
chr6 (7-47)||(14438253-14438293)
chr6 (198-230)||(24949752-24949784)
chr6 (202-230)||(31971151-31971179)
[»] chr5 (2 HSPs)
chr5 (201-230)||(25027692-25027721)
chr5 (202-230)||(13144879-13144907)
[»] chr4 (8 HSPs)
chr4 (201-230)||(580532-580561)
chr4 (201-230)||(4758898-4758927)
chr4 (201-230)||(20688537-20688566)
chr4 (201-230)||(36099485-36099514)
chr4 (201-230)||(53621449-53621478)
chr4 (202-230)||(18135434-18135462)
chr4 (198-230)||(23125641-23125673)
chr4 (202-230)||(49122641-49122669)
[»] chr3 (4 HSPs)
chr3 (201-230)||(8243803-8243832)
chr3 (201-230)||(10049666-10049695)
chr3 (202-230)||(9440249-9440277)
chr3 (202-230)||(26999020-26999048)
[»] chr2 (4 HSPs)
chr2 (201-230)||(6761463-6761492)
chr2 (202-230)||(16241388-16241416)
chr2 (202-230)||(25892065-25892093)
chr2 (202-230)||(44737403-44737431)
[»] scaffold1377 (1 HSPs)
scaffold1377 (7-47)||(1344-1384)
[»] chr7 (2 HSPs)
chr7 (201-229)||(7107752-7107780)
chr7 (202-230)||(23248789-23248817)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 28720101 - 28719899
Alignment:
Q  1 gcaaagtatattctgcagaatgcgagacttttacaagaaatgacaattgaggttactactagctccttaaatgaaatgcaaaagcatgaaataatagaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28720101 gcaaagtatattctgcagaatgcgagacttttacaagaaatgacaattgaggttactactagctcctcaaatgaaatgcaaaagcatgaaataatagaag 28720002  T
Q  101 aactatccagttgtccaaagatgtctcaaggatgtaaacttacattttgaatttattaagtgactagatcatcagtgnnnnnnnagttggcggtttgatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  28720001 aactatccagttgtccaaagatgtctcaaggatgtaaacttacattttgaatttattaagtgactagatcatcagtgtttttttagttggcggtttgatg 28719902  T
Q  201 ata 203  Q
    |||    
T  28719901 ata 28719899  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Original strand, 2352307 - 2352336
Alignment:
Q  201 atactacctccggtcctatttacaagagac 230  Q
    ||||||||||||||||||||||||||||||    
T  2352307 atactacctccggtcctatttacaagagac 2352336  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Original strand, 14281588 - 14281617
Alignment:
Q  201 atactacctccggtcctatttacaagagac 230  Q
    ||||||||||||||||||||||||||||||    
T  14281588 atactacctccggtcctatttacaagagac 14281617  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Original strand, 23398078 - 23398107
Alignment:
Q  201 atactacctccggtcctatttacaagagac 230  Q
    ||||||||||||||||||||||||||||||    
T  23398078 atactacctccggtcctatttacaagagac 23398107  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Original strand, 38830481 - 38830510
Alignment:
Q  201 atactacctccggtcctatttacaagagac 230  Q
    ||||||||||||||||||||||||||||||    
T  38830481 atactacctccggtcctatttacaagagac 38830510  T

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Target: scaffold1089 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 660 - 514
Alignment:
Q  7 tatattctgcagaatgcgagacttttacaagaaatgacaattgaggttactactagctccttaaatgaaatgc------aaaagcatgaaataatagaag 100  Q
    ||||||||||||||||| ||  |||||||||| |||||||| || ||||||||| |||||| |||||||||||      ||| |  |||||| |||||||    
T  660 tatattctgcagaatgctaggtttttacaagatatgacaatcgacgttactactcgctcctcaaatgaaatgcttttagaaaggagtgaaattatagaag 561  T
Q  101 aactatccagttgtccaaagatgtctcaaggatgtaaacttacattt 147  Q
    || | |||  |||||||| ||| |||| || ||||||||||||||||    
T  560 aattgtcctcttgtccaaggatttctccagcatgtaaacttacattt 514  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 229
Target Start/End: Complemental strand, 2339446 - 2339412
Alignment:
Q  195 ttgatgatactacctccggtcctatttacaagaga 229  Q
    ||||||||||| |||||||||||||||||||||||    
T  2339446 ttgatgatactccctccggtcctatttacaagaga 2339412  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 2229219 - 2229191
Alignment:
Q  202 tactacctccggtcctatttacaagagac 230  Q
    |||||||||||||||||||||||||||||    
T  2229219 tactacctccggtcctatttacaagagac 2229191  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 25848116 - 25848088
Alignment:
Q  202 tactacctccggtcctatttacaagagac 230  Q
    |||||||||||||||||||||||||||||    
T  25848116 tactacctccggtcctatttacaagagac 25848088  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 14435640 - 14435591
Alignment:
Q  1 gcaaagtatattctgcagaatgcgagacttttacaagaaatgacaattga 50  Q
    ||||| |||||  ||||||||||||| ||||||||||| |||||||||||    
T  14435640 gcaaaatatatattgcagaatgcgaggcttttacaagatatgacaattga 14435591  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Original strand, 22880916 - 22880945
Alignment:
Q  201 atactacctccggtcctatttacaagagac 230  Q
    ||||||||||||||||||||||||||||||    
T  22880916 atactacctccggtcctatttacaagagac 22880945  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Original strand, 22898851 - 22898880
Alignment:
Q  201 atactacctccggtcctatttacaagagac 230  Q
    ||||||||||||||||||||||||||||||    
T  22898851 atactacctccggtcctatttacaagagac 22898880  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 14438293 - 14438253
Alignment:
Q  7 tatattctgcagaatgcgagacttttacaagaaatgacaat 47  Q
    |||||| ||||||||||||| ||||||||||| ||||||||    
T  14438293 tatattttgcagaatgcgaggcttttacaagatatgacaat 14438253  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 24949784 - 24949752
Alignment:
Q  198 atgatactacctccggtcctatttacaagagac 230  Q
    |||||||| ||||||||||||||||||||||||    
T  24949784 atgatactccctccggtcctatttacaagagac 24949752  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 31971179 - 31971151
Alignment:
Q  202 tactacctccggtcctatttacaagagac 230  Q
    |||||||||||||||||||||||||||||    
T  31971179 tactacctccggtcctatttacaagagac 31971151  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Original strand, 25027692 - 25027721
Alignment:
Q  201 atactacctccggtcctatttacaagagac 230  Q
    ||||||||||||||||||||||||||||||    
T  25027692 atactacctccggtcctatttacaagagac 25027721  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 13144879 - 13144907
Alignment:
Q  202 tactacctccggtcctatttacaagagac 230  Q
    |||||||||||||||||||||||||||||    
T  13144879 tactacctccggtcctatttacaagagac 13144907  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Complemental strand, 580561 - 580532
Alignment:
Q  201 atactacctccggtcctatttacaagagac 230  Q
    ||||||||||||||||||||||||||||||    
T  580561 atactacctccggtcctatttacaagagac 580532  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Complemental strand, 4758927 - 4758898
Alignment:
Q  201 atactacctccggtcctatttacaagagac 230  Q
    ||||||||||||||||||||||||||||||    
T  4758927 atactacctccggtcctatttacaagagac 4758898  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Complemental strand, 20688566 - 20688537
Alignment:
Q  201 atactacctccggtcctatttacaagagac 230  Q
    ||||||||||||||||||||||||||||||    
T  20688566 atactacctccggtcctatttacaagagac 20688537  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Original strand, 36099485 - 36099514
Alignment:
Q  201 atactacctccggtcctatttacaagagac 230  Q
    ||||||||||||||||||||||||||||||    
T  36099485 atactacctccggtcctatttacaagagac 36099514  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Complemental strand, 53621478 - 53621449
Alignment:
Q  201 atactacctccggtcctatttacaagagac 230  Q
    ||||||||||||||||||||||||||||||    
T  53621478 atactacctccggtcctatttacaagagac 53621449  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 18135462 - 18135434
Alignment:
Q  202 tactacctccggtcctatttacaagagac 230  Q
    |||||||||||||||||||||||||||||    
T  18135462 tactacctccggtcctatttacaagagac 18135434  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 23125641 - 23125673
Alignment:
Q  198 atgatactacctccggtcctatttacaagagac 230  Q
    |||||||| ||||||||||||||||||||||||    
T  23125641 atgatactccctccggtcctatttacaagagac 23125673  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 49122669 - 49122641
Alignment:
Q  202 tactacctccggtcctatttacaagagac 230  Q
    |||||||||||||||||||||||||||||    
T  49122669 tactacctccggtcctatttacaagagac 49122641  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Complemental strand, 8243832 - 8243803
Alignment:
Q  201 atactacctccggtcctatttacaagagac 230  Q
    ||||||||||||||||||||||||||||||    
T  8243832 atactacctccggtcctatttacaagagac 8243803  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Original strand, 10049666 - 10049695
Alignment:
Q  201 atactacctccggtcctatttacaagagac 230  Q
    ||||||||||||||||||||||||||||||    
T  10049666 atactacctccggtcctatttacaagagac 10049695  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 9440277 - 9440249
Alignment:
Q  202 tactacctccggtcctatttacaagagac 230  Q
    |||||||||||||||||||||||||||||    
T  9440277 tactacctccggtcctatttacaagagac 9440249  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 26999020 - 26999048
Alignment:
Q  202 tactacctccggtcctatttacaagagac 230  Q
    |||||||||||||||||||||||||||||    
T  26999020 tactacctccggtcctatttacaagagac 26999048  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Original strand, 6761463 - 6761492
Alignment:
Q  201 atactacctccggtcctatttacaagagac 230  Q
    ||||||||||||||||||||||||||||||    
T  6761463 atactacctccggtcctatttacaagagac 6761492  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 16241416 - 16241388
Alignment:
Q  202 tactacctccggtcctatttacaagagac 230  Q
    |||||||||||||||||||||||||||||    
T  16241416 tactacctccggtcctatttacaagagac 16241388  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 25892093 - 25892065
Alignment:
Q  202 tactacctccggtcctatttacaagagac 230  Q
    |||||||||||||||||||||||||||||    
T  25892093 tactacctccggtcctatttacaagagac 25892065  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 44737431 - 44737403
Alignment:
Q  202 tactacctccggtcctatttacaagagac 230  Q
    |||||||||||||||||||||||||||||    
T  44737431 tactacctccggtcctatttacaagagac 44737403  T

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Target: scaffold1377 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1377
Description:

Target: scaffold1377; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 1384 - 1344
Alignment:
Q  7 tatattctgcagaatgcgagacttttacaagaaatgacaat 47  Q
    |||||| ||||||||||||| ||||||||||| ||||||||    
T  1384 tatattttgcagaatgcgaggcttttacaagatatgacaat 1344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 7107780 - 7107752
Alignment:
Q  201 atactacctccggtcctatttacaagaga 229  Q
    |||||||||||||||||||||||||||||    
T  7107780 atactacctccggtcctatttacaagaga 7107752  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 23248817 - 23248789
Alignment:
Q  202 tactacctccggtcctatttacaagagac 230  Q
    |||||||||||||||||||||||||||||    
T  23248817 tactacctccggtcctatttacaagagac 23248789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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