View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16115_low_1 (Length: 467)
Name: NF16115_low_1
Description: NF16115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16115_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 5257466 - 5257188
Alignment:
| Q |
18 |
attcagcggtagatgctattcgtagatatggtttctatagttaacttgggcaacaggttacacgtatgttatttagtggttccttaatggcagttgatat |
117 |
Q |
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| T |
5257466 |
attcagcggtagatgctattcgtagatatggtttctatagttaacttgggcaacaggttacacgtatgttatttagtggttccttaatggcagttgatat |
5257367 |
T |
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| Q |
118 |
agttactataggagtagttccaactcacatgtgtgctccaacagtagatgctatttatagattccttggttacaattggtaattgtccttcttacacacc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5257366 |
agttactataggagtagttccaactcacatgtgtgctccaacagtagatgctatttatagattccttggttacaattggcaattgtccttcttacacacc |
5257267 |
T |
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| Q |
218 |
ttgaggaaaggaaataagtgtacatattctcttgcttataagggagcttctcaagaatctcatttggttcatttagtta |
296 |
Q |
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| T |
5257266 |
ttgaggaaaggaaataagtgtacatattctcttgcttataagggagcttctcaagaatctcatttggttcatttagtta |
5257188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 390 - 467
Target Start/End: Complemental strand, 5256893 - 5256815
Alignment:
| Q |
390 |
tatcatcctccatagaatgcataagtacc-acttcatccaccatttcagtattcctctcttcatctgtttgttcagtac |
467 |
Q |
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| T |
5256893 |
tatcatcctccatagaatgcataagtacccacttcatccaccatttcagtattcctctcttcatctgtttgttcagtac |
5256815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 5256994 - 5256950
Alignment:
| Q |
289 |
tttagttactatattctttcgtgttttcttttttctgttcagact |
333 |
Q |
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| T |
5256994 |
tttagttactatattctttcgtgttttcttttttctgttcagact |
5256950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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