View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16115_low_12 (Length: 240)
Name: NF16115_low_12
Description: NF16115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16115_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 38 - 218
Target Start/End: Complemental strand, 28948087 - 28947907
Alignment:
| Q |
38 |
atgaaagaatgaaggaatgaaaagaataaatgcatcacttaaaagcaacatattacctttgcaacattatcaaccctagcatcagaagcattacaagcag |
137 |
Q |
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| T |
28948087 |
atgaaagaatgaaggaatgaaaagaataaatgcatcacttaaaagcaacatattacctttgcaacattatcaaccctagcatcagaagcattacaagcag |
28947988 |
T |
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| Q |
138 |
ccctcagcctcttttccatagaatgtatggcatttgaacactgtatatctgcctccatgaatgcattccttttgtaatcct |
218 |
Q |
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| T |
28947987 |
ccctcagcctcttttccatagaatgtatggcatttgaacactgtatatctgcctccatgaatgcattccttttgtaatcct |
28947907 |
T |
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Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 38 - 218
Target Start/End: Complemental strand, 34813442 - 34813262
Alignment:
| Q |
38 |
atgaaagaatgaaggaatgaaaagaataaatgcatcacttaaaagcaacatattacctttgcaacattatcaaccctagcatcagaagcattacaagcag |
137 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34813442 |
atgaaagaatgaaggaatgaaaagaataaaagcatcacttaaaagcaacatattacctttgcaacattatcaaccctagcatcagaagcattacaagcag |
34813343 |
T |
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| Q |
138 |
ccctcagcctcttttccatagaatgtatggcatttgaacactgtatatctgcctccatgaatgcattccttttgtaatcct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34813342 |
ccctcagcctcttttccatagaatgtatggcatttgaacactgtatatctgcctccatgaatgcattccttttgtaatcct |
34813262 |
T |
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