View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16115_low_14 (Length: 237)

Name: NF16115_low_14
Description: NF16115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16115_low_14
NF16115_low_14
[»] chr1 (2 HSPs)
chr1 (1-165)||(28720094-28720258)
chr1 (5-69)||(37996634-37996698)
[»] chr6 (7 HSPs)
chr6 (4-141)||(14435636-14435773)
chr6 (4-64)||(7820004-7820064)
chr6 (4-84)||(7815398-7815478)
chr6 (4-64)||(7805802-7805862)
chr6 (4-119)||(10416411-10416526)
chr6 (29-121)||(7818291-7818383)
chr6 (5-81)||(7872237-7872313)
[»] scaffold1089 (1 HSPs)
scaffold1089 (26-141)||(684-799)
[»] chr3 (2 HSPs)
chr3 (5-138)||(2467568-2467701)
chr3 (45-120)||(43693604-43693679)
[»] chr5 (3 HSPs)
chr5 (5-95)||(14308513-14308603)
chr5 (40-98)||(25614288-25614346)
chr5 (28-136)||(24005026-24005134)
[»] chr4 (1 HSPs)
chr4 (4-82)||(14018654-14018732)
[»] scaffold1377 (1 HSPs)
scaffold1377 (5-81)||(1387-1463)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 28720094 - 28720258
Alignment:
Q  1 tactttgcaaatcggagatcattttccgagccttcaaaatttaaaatagtacatgacctgaggtgagactcaacacattcaatacccaaaattgggcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28720094 tactttgcaaatcggagatcattttccgagccttcaaaatttaaaatagtacatgacctgaggtgagactcaacacattcaatacccaaaattgggcaat 28720193  T
Q  101 cccaatccttggataagctggcgttccactgtcaaagggataaaacatggcattcattttccatc 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28720194 cccaatccttggataagctggcgttccactgtcaaagggataaaacatagcattcattttccatc 28720258  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 37996634 - 37996698
Alignment:
Q  5 ttgcaaatcggagatcattttccgagccttcaaaatttaaaatagtacatgacctgaggtgagac 69  Q
    |||||||||| |||||||   ||||||||||||| ||||||||||||||||| || |||||||||    
T  37996634 ttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtacatgatcttaggtgagac 37996698  T

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Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 14435636 - 14435773
Alignment:
Q  4 tttgcaaatcggagatcattttccgagccttcaaaatttaaaatagtacatgacctgaggtgagactcaacacattcaatacccaaaattgggcaatccc 103  Q
    ||||||||| | || |||||| |||| |||||||| |||||||| |||||||| ||||||||||||  ||||||||||||| || || |||| || | ||    
T  14435636 tttgcaaattgaaggtcatttgccgatccttcaaagtttaaaattgtacatgatctgaggtgagacgaaacacattcaataaccgaatttggccatttcc 14435735  T
Q  104 aatccttggataagctggcgttccactgtcaaagggat 141  Q
    | ||||||||| |||||    |||||||||||||||||    
T  14435736 attccttggatgagctgtacctccactgtcaaagggat 14435773  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 7820004 - 7820064
Alignment:
Q  4 tttgcaaatcggagatcattttccgagccttcaaaatttaaaatagtacatgacctgaggt 64  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  7820004 tttgcaaatcgaagatcattttccgagccttcaaagtttaaaatagtacatgatctgaggt 7820064  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 7815478 - 7815398
Alignment:
Q  4 tttgcaaatcggagatcattttccgagccttcaaaatttaaaatagtacatgacctgaggtgagactcaacacattcaata 84  Q
    |||| |||||| |||||||||||||||||||  || ||||||||||||||||| |||||||||||   |||||||||||||    
T  7815478 tttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctgaggtgagatgaaacacattcaata 7815398  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 7805802 - 7805862
Alignment:
Q  4 tttgcaaatcggagatcattttccgagccttcaaaatttaaaatagtacatgacctgaggt 64  Q
    ||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| |||||||    
T  7805802 tttgcaaatcgaagatcattatccgagccgtcaaagtttaaaatagtacatgatctgaggt 7805862  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 10416526 - 10416411
Alignment:
Q  4 tttgcaaatcggagatcattttccgagccttcaaaatttaaaatagtacatgacctgaggtgagactcaacacattcaatacccaaaattgggcaatccc 103  Q
    ||||||||| | ||||||||||||||||| || || ||||| ||||||||||| || |||| ||||  | | ||||||| | ||||||||||| | | ||    
T  10416526 tttgcaaattgaagatcattttccgagccatcgaagtttaatatagtacatgatctaaggttagacgaatcccattcaagaaccaaaattgggtatttcc 10416427  T
Q  104 aatccttggataagct 119  Q
    | |||| |||||||||    
T  10416426 attcctcggataagct 10416411  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 7818383 - 7818291
Alignment:
Q  29 agccttcaaaatttaaaatagtacatgacctgaggtgagactcaacacattcaatacccaaaattgggcaatcccaatccttggataagctgg 121  Q
    |||||| ||| |||||||||||||||||  |||||| ||||  ||||||||||| | |||||||| || | | ||| ||||||||| ||||||    
T  7818383 agccttgaaagtttaaaatagtacatgatttgaggttagacgaaacacattcaagaaccaaaatttggtatttccattccttggatgagctgg 7818291  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 7872313 - 7872237
Alignment:
Q  5 ttgcaaatcggagatcattttccgagccttcaaaatttaaaatagtacatgacctgaggtgagactcaacacattca 81  Q
    |||||||||| ||||||||| | ||||| |  || ||||||||||||||||| || |||||||||  ||||||||||    
T  7872313 ttgcaaatcgaagatcatttgctgagccatggaagtttaaaatagtacatgatctaaggtgagacgaaacacattca 7872237  T

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Target: scaffold1089 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 684 - 799
Alignment:
Q  26 ccgagccttcaaaatttaaaatagtacatgacctgaggtgagactcaacacattcaatacccaaaattgggcaatcccaatccttggataagctggcgtt 125  Q
    |||| |||||||| |||||||| |||||||| ||||||||||||  ||||||||||| | || || |||| || | ||| ||||||||| ||||||   |    
T  684 ccgatccttcaaagtttaaaattgtacatgatctgaggtgagacgaaacacattcaagaaccgaatttggccatttccattccttggatgagctggacct 783  T
Q  126 ccactgtcaaagggat 141  Q
    ||||||||||||||||    
T  784 ccactgtcaaagggat 799  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 2467568 - 2467701
Alignment:
Q  5 ttgcaaatcggagatcattttccgagccttcaaaatttaaaatagtacatgacctgaggtgagactcaacacattcaatacccaaaattgggcaatccca 104  Q
    |||||||||| ||||||||| | || ||||||||||||||||| ||||||||  | |||||||||  ||| ||||||| | || || |||| || | |||    
T  2467568 ttgcaaatcgaagatcatttgcagacccttcaaaatttaaaattgtacatgatataaggtgagacgaaacgcattcaagaaccgaacttggacatttcca 2467667  T
Q  105 atccttggataagctggcgttccactgtcaaagg 138  Q
     || |||| |||||||| | ||||||||||||||    
T  2467668 ttctttggctaagctggagctccactgtcaaagg 2467701  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 43693604 - 43693679
Alignment:
Q  45 aatagtacatgacctgaggtgagactcaacacattcaatacccaaaattgggcaatcccaatccttggataagctg 120  Q
    |||||||||||| ||||||| ||||  ||||||||||||| |  |||||||| | ||| |||| ||||||||||||    
T  43693604 aatagtacatgatctgaggttagacggaacacattcaatagctgaaattgggaattccaaatctttggataagctg 43693679  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 14308603 - 14308513
Alignment:
Q  5 ttgcaaatcggagatcattttccgagccttcaaaatttaaaatagtacatgacctgaggtgagactcaacacattcaatacccaaaattgg 95  Q
    |||||||||| ||||||||| |  ||| || ||| ||||||||||||||||| |||||||| |||  ||||||||||| | ||||| ||||    
T  14308603 ttgcaaatcgaagatcatttccatagcattgaaagtttaaaatagtacatgatctgaggtgtgacaaaacacattcaagagccaaacttgg 14308513  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 25614346 - 25614288
Alignment:
Q  40 tttaaaatagtacatgacctgaggtgagactcaacacattcaatacccaaaattgggca 98  Q
    ||||||||||||||||||||||||||| ||  || |||||||| | |||||||||||||    
T  25614346 tttaaaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggca 25614288  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 24005026 - 24005134
Alignment:
Q  28 gagccttcaaaatttaaaatagtacatgacctgaggtgagactcaacacattcaatacccaaaattgggcaatcccaatccttggataagctggcgttcc 127  Q
    ||||| ||| |||| |||||||||||||| |||||||||||   ||||||||||  | || |||||||||| | ||| || || ||||||| || |  ||    
T  24005026 gagccatcagaattgaaaatagtacatgatctgaggtgagaagaaacacattcaggaaccgaaattgggcatttccattcattcgataagcaggagcacc 24005125  T
Q  128 actgtcaaa 136  Q
    |||||||||    
T  24005126 actgtcaaa 24005134  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 14018732 - 14018654
Alignment:
Q  4 tttgcaaatcggagatcattttccgagccttcaaaatttaaaatagtacatgacctgaggtgagactcaacacattcaa 82  Q
    ||||||||||| ||||||||| |||||   ||||| ||||||||||||||||| || || ||||||  |||||||||||    
T  14018732 tttgcaaatcgaagatcatttgccgagttatcaaagtttaaaatagtacatgatctaagatgagacgaaacacattcaa 14018654  T

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Target: scaffold1377 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1377
Description:

Target: scaffold1377; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 1387 - 1463
Alignment:
Q  5 ttgcaaatcggagatcattttccgagccttcaaaatttaaaatagtacatgacctgaggtgagactcaacacattca 81  Q
    |||||||||| |||| |||  ||||||||||||| |||||||| ||||| || |||||||||||   ||||||||||    
T  1387 ttgcaaatcgaagattattggccgagccttcaaagtttaaaattgtacaggatctgaggtgagaggaaacacattca 1463  T

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