View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16115_low_17 (Length: 226)
Name: NF16115_low_17
Description: NF16115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16115_low_17 |
 | |
|
| [»] scaffold0189 (1 HSPs) |
| | |
|
| [»] scaffold0154 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0189 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 1072 - 864
Alignment:
| Q |
1 |
aagttcatctaacactaatccaactatctaattccgacgaactcaccagccgttcatcagtcacaagctgccagagccggtccgccgcggagaaaaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1072 |
aagttcatctaacactaatccaactatctaattccgacgaactcaccagccgttcatcagtcacaagctgccagagccggtccgccgcggagcaaaattt |
973 |
T |
|
| Q |
101 |
ggaatcaaaatcccatggacttgattcttccgattccggtgaattcggaaccgaatcagtctcactagaaacccaatcattgaaatcaaagtgatttctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
972 |
ggaatcaaaatcccatggacttgattcttccgattccggtgaattcggaaccgaatcagtcgcactagaaacccaatcattgaaatcaaagtgatttctt |
873 |
T |
|
| Q |
201 |
ggtgatgat |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
872 |
ggtgatgat |
864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 14267 - 14465
Alignment:
| Q |
4 |
ttcatctaacactaatccaactatctaattccgacgaactcaccagccgttcatcagtcacaagctgccagagccggtccgccgcggagaaaaatttgga |
103 |
Q |
| |
|
|||| ||||||||||||||||||||| || |||| |||||| | ||| || ||||||||||||||||| |||||| ||| ||||||| ||||||| || |
|
|
| T |
14267 |
ttcacctaacactaatccaactatctgatctcgaccaactcatcggcccttgatcagtcacaagctgccggagccgatccaccgcggaacaaaatttaga |
14366 |
T |
|
| Q |
104 |
atcaaaatcccatggacttgattcttccgattccggtgaattcggaaccgaatcagtctcactagaaacccaatcattgaaatcaaagtgatttcttgg |
202 |
Q |
| |
|
||||||||||||| || |||| |||||||||||||||||| | ||||| |||||| | || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14367 |
atcaaaatcccattgatttgagtcttccgattccggtgaacttggaactgaatcactagcatcggaaacccaatcattgaaatcaaagtgatttcttgg |
14465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 23687 - 23888
Alignment:
| Q |
4 |
ttcatctaacactaatccaactatctaattccgacgaactcaccagccgttcatcagtcacaagctgccagagccggtccgccgcggagaaaaatttgga |
103 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| |||||||| || |||| | |||| ||||| || |||||||||| |||| || || | || |
|
|
| T |
23687 |
ttcacctaacactaatccaactatctgattccgaccaactcaccggcttttcaaccgtcagaagcttcccgagccggtccaccgcagaatcaatactaga |
23786 |
T |
|
| Q |
104 |
atcaaaatcccatggacttgattcttccgattccggtgaattcggaaccgaatcagtctcactagaaacccaatcattgaaatcaaagtgatttcttggt |
203 |
Q |
| |
|
||||| ||||||||||||| | |||||| ||||||||||||||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23787 |
atcaacatcccatggacttaactcttccaattccggtgaattcggagcagaatcattcacactagaaacccaatcattgaaatcaaagtgatttcttggt |
23886 |
T |
|
| Q |
204 |
ga |
205 |
Q |
| |
|
|| |
|
|
| T |
23887 |
ga |
23888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University