View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16115_low_2 (Length: 441)
Name: NF16115_low_2
Description: NF16115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16115_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Complemental strand, 40972740 - 40972311
Alignment:
| Q |
18 |
tatacttctctggaactatttataagaaaaaattagtgtatttggaccaaattttataccaaatacattagctttttcgtatacaagagcatattgcaga |
117 |
Q |
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| T |
40972740 |
tatactcctctgatactatttataagaaaaaattagtgtatttggaccaaattttataccaaatacattagctttttcgtatataagagcatattgcaga |
40972641 |
T |
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| Q |
118 |
tagaaatgatggcataggttttggagtttcgaaacaataagttagtt-aaaattagggtttgatttataattttattgaacctgcatagctttctcctgt |
216 |
Q |
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| T |
40972640 |
tagaaatgatgacataggttttggagtttcgaaacaataagttagtttaaaattagggtttgatttataaatttattgaacctgcatagctttctcctgt |
40972541 |
T |
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| Q |
217 |
cagaaacaaaccccttgatctataggaaggaaacttctcgtaccattttaacatgaacaaaagtgtatcattagctgtcaaaaagaaattaaggaattat |
316 |
Q |
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| T |
40972540 |
cagaaacaaaccccttgatctataggaaggaaacttctcgtaccattttaacatgaacaaaagtgtatcattagctgtcaaaaagaaattaaggaattat |
40972441 |
T |
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| Q |
317 |
atatatccatgcctggtaaaacaaataaactgcatttataaattttctcattt--------------------ataaattagttcacataaagtttaatt |
396 |
Q |
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| T |
40972440 |
atatgtccatgcctggtaaaacaaataaactgcatttataaattttctcattttttccatagataaacaccgcataaattagttcacataaagtttaatt |
40972341 |
T |
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| Q |
397 |
caatacctgtggaggcgtcatcatagttgt |
426 |
Q |
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| T |
40972340 |
caatacctgtggaggtgtcatcatagttgt |
40972311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 40960946 - 40961050
Alignment:
| Q |
196 |
acctgcatagctttctcctgtcagaaacaaaccccttgatctataggaaggaaacttctcgtaccattttaacatgaacaaaagtgtatcattagctgtc |
295 |
Q |
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||||||||| |||||||| || |||||||| ||| ||| | || ||||||||||||||||||||||| | |||||||||||| | ||||| |||| | |
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| T |
40960946 |
acctgcataactttctccggtaagaaacaacttcctcgatttgtatgaaggaaacttctcgtaccatttcagcatgaacaaaagcatgtcattggctgcc |
40961045 |
T |
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| Q |
296 |
aaaaa |
300 |
Q |
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||||| |
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| T |
40961046 |
aaaaa |
40961050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 30905798 - 30905910
Alignment:
| Q |
196 |
acctgcatagctttctcctgtcagaaacaaaccccttgatctataggaaggaaacttctcgtaccattttaacatgaacaaaagtgtatcattagctgtc |
295 |
Q |
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|||||||||||||||||| || |||||||| | || ||| | || | ||||||||||||| ||||||| | | |||| |||| ||||||| |||| | |
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| T |
30905798 |
acctgcatagctttctccggtaagaaacaacgctctggatttgtatgtaggaaacttctcgaaccatttcaggaagaacgaaagcatatcattggctgcc |
30905897 |
T |
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| Q |
296 |
aaaaagaaattaa |
308 |
Q |
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||||| ||||||| |
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| T |
30905898 |
aaaaacaaattaa |
30905910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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