View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16115_low_4 (Length: 329)
Name: NF16115_low_4
Description: NF16115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16115_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 314
Target Start/End: Complemental strand, 38060977 - 38060676
Alignment:
| Q |
13 |
atgaacaaagtataccttcacatttgtccaagggacacaaatagaattccttgaagcatctaagttcataatagattaatgtaatatgctttgttatttc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
38060977 |
atgaacaaagtataccttcacatttgtccaagggacacagatagaattccttgaagcatctaagttcataatagagtaatgtaatatgcttcgttatttc |
38060878 |
T |
|
| Q |
113 |
tcttttatgtggtgagtttaattcaaattagtcaataataatagtttgcttgtagtgcaagtaactgtgtaggtagagttagttttctgttataacaact |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||| |||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
38060877 |
tcttttatgtggtgagtttaattcaaattagttaagaataatagttttcttgtagcgcaagtaactgtgtcgatagagttagttttctgttataacaact |
38060778 |
T |
|
| Q |
213 |
agtttgttagtgttttatttctgttatacacttgagcaattatagctctttcaagtgttgtataaattgatgatgtgaataagaaaatcacaacttagtg |
312 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
38060777 |
agtttgttcgtgttttatttctgttatgtacttgagcaattatagctctttcaagtgttgaataaattgatgatgtcgataagaaaattacaacttagtg |
38060678 |
T |
|
| Q |
313 |
at |
314 |
Q |
| |
|
|| |
|
|
| T |
38060677 |
at |
38060676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 38073811 - 38073863
Alignment:
| Q |
13 |
atgaacaaagtataccttcacatttgtccaagggacacaaatagaattccttg |
65 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||| ||||||||||| |||| |
|
|
| T |
38073811 |
atgaacaaagtataccttctcatgtgtccaagggacgcaaatagaatttcttg |
38073863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 38087321 - 38087365
Alignment:
| Q |
13 |
atgaacaaagtataccttcacatttgtccaagggacacaaataga |
57 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||| |||||||| |
|
|
| T |
38087321 |
atgaacaaagtataccttctcatgtgtccaagggacgcaaataga |
38087365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 38082893 - 38082935
Alignment:
| Q |
13 |
atgaacaaagtataccttcacatttgtccaagggacacaaata |
55 |
Q |
| |
|
||||||||||||||||||| | | ||||||||||||||||||| |
|
|
| T |
38082893 |
atgaacaaagtataccttctcttgtgtccaagggacacaaata |
38082935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University