View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16115_low_8 (Length: 270)
Name: NF16115_low_8
Description: NF16115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16115_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 22488595 - 22488488
Alignment:
| Q |
143 |
gaaaaatgcttgatagcacgacagaataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatgtttttcattttattaattatttattc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22488595 |
gaaaaatgcttgatagcacgacagaataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatgtttttcattttattaattatttattc |
22488496 |
T |
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| Q |
243 |
tatgccat |
250 |
Q |
| |
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|||||||| |
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| T |
22488495 |
tatgccat |
22488488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 8558104 - 8557996
Alignment:
| Q |
142 |
agaaaaatgcttgatagcacgacagaataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatgtttttcattttattaattatttatt |
241 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8558104 |
agaaaaatgcttgatagcacgacagaataacatgcatgaatgcacacgacatatttcaaaccatttgatgaaatgtttttcattttattaattatttatt |
8558005 |
T |
|
| Q |
242 |
ctatgccat |
250 |
Q |
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||||||||| |
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| T |
8558004 |
ctatgccat |
8557996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 51935528 - 51935479
Alignment:
| Q |
141 |
aagaaaaatgcttgatagcacgacagaataacatgcacgaatgcacacga |
190 |
Q |
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||||||||||||||||||||||||| | ||||| ||||||| |||||||| |
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| T |
51935528 |
aagaaaaatgcttgatagcacgacatactaacaagcacgaaggcacacga |
51935479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 34651416 - 34651465
Alignment:
| Q |
141 |
aagaaaaatgcttgatagcacgacagaataacatgcacgaatgcacacga |
190 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| ||| ||| |||||||| |
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|
| T |
34651416 |
aagaaaaatgcttgatagcacgacatattaacaagcatgaaggcacacga |
34651465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 33508360 - 33508262
Alignment:
| Q |
143 |
gaaaaatgcttgatagcacgacagaataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatgtttttcattttattaattatttatt |
241 |
Q |
| |
|
||||||||||||||||||||||| | | ||| ||||||| ||||||||||||| | || || ||||||||| |||||||||||||||||||||||||| |
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| T |
33508360 |
gaaaaatgcttgatagcacgacatagtgacaagcacgaaggcacacgacatatcttaagccgtttgatgaatcgtttttcattttattaattatttatt |
33508262 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 8403021 - 8402973
Alignment:
| Q |
142 |
agaaaaatgcttgatagcacgacagaataacatgcacgaatgcacacga |
190 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||| |||||||| |
|
|
| T |
8403021 |
agaaaaatgcttgatagcacgacatactaacaagcacgaaggcacacga |
8402973 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 190
Target Start/End: Complemental strand, 11210324 - 11210277
Alignment:
| Q |
143 |
gaaaaatgcttgatagcacgacagaataacatgcacgaatgcacacga |
190 |
Q |
| |
|
||||||||||||||||||||||| | ||||| ||||||| |||||||| |
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| T |
11210324 |
gaaaaatgcttgatagcacgacatactaacaagcacgaaggcacacga |
11210277 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 190
Target Start/End: Complemental strand, 13798508 - 13798461
Alignment:
| Q |
143 |
gaaaaatgcttgatagcacgacagaataacatgcacgaatgcacacga |
190 |
Q |
| |
|
||||||||||||||||||||||| | ||||| ||||||| |||||||| |
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|
| T |
13798508 |
gaaaaatgcttgatagcacgacatattaacaagcacgaaggcacacga |
13798461 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 31367728 - 31367683
Alignment:
| Q |
143 |
gaaaaatgcttgatagcacgacagaataacatgcacgaatgcacac |
188 |
Q |
| |
|
||||||||||||||||||||||| | ||||| ||||||| |||||| |
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| T |
31367728 |
gaaaaatgcttgatagcacgacatactaacaagcacgaaggcacac |
31367683 |
T |
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