View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16116_high_2 (Length: 389)
Name: NF16116_high_2
Description: NF16116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16116_high_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 389
Target Start/End: Complemental strand, 19765939 - 19765567
Alignment:
| Q |
17 |
acctagcacaaattaaggatagaataacatacatgcttcaaaataactcggcattttgcagaggccttcaggcatgagaatattgacctttttacttcag |
116 |
Q |
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| T |
19765939 |
acctagcacaaattaaggatagaataacatacatgcttcaaaataactcggcattttgcagaggccttcaggcatgagaatatcgacctttttacttcag |
19765840 |
T |
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| Q |
117 |
tgtgtccaacattccatatcatcatctcttccaaaactcttgcattcttcaatatgtagcatgctagatgaagctctccttcaaggcctaagaatgtgta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19765839 |
tgtgtccaacattccatatcatcatctcttccaaaactcttgcattcttcaatatgtagcatgctagatgaagctctccttcaaggcctaagaatgtgta |
19765740 |
T |
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| Q |
217 |
aagatcacaactttttaaatgtgatgacagacattccgggacaactttagggtcgacccattgttccttatcatcttttctactccatgtttcgcttgtt |
316 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19765739 |
aagatcgcaactttttaaatgtgatgacagacattccgggacaactttagggtcgacccattgttccttatcatcttttctactccatgtttcgcttgtt |
19765640 |
T |
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| Q |
317 |
gcaccatggccaccagcctgttagtaatgtgtatgaaattaaaacaaaagctaaagatgtgttgtgaaaagat |
389 |
Q |
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| T |
19765639 |
gcaccatggccaccagcctgttagtaatgcgtatgaaattaaatcaaaagctaaagatgtgttatgaaaagat |
19765567 |
T |
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