View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16116_high_3 (Length: 250)
Name: NF16116_high_3
Description: NF16116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16116_high_3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 29069624 - 29069375
Alignment:
| Q |
12 |
atgaacaacatctttatccttttctaataaattggatatttactttttaatcattctaccgatagatatatttggtcctttatcattaaccaaaaatgtg |
111 |
Q |
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| T |
29069624 |
atgaacaacatctttatccttttctaataaattggatatttactttttaatcattctactgatagatatatttggtcctttatcattaatcaaaaatgtg |
29069525 |
T |
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| Q |
112 |
ttttggt-ctttatctttttaaaaagattcatgttttagtcctcaagtcataaagcataacat----------aagtttaatacatgacaattatggtgt |
200 |
Q |
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| T |
29069524 |
ttttggtcctttatctttttaaaaagattcatgttttagtcctttagtcataaagcataacataagttaacggaagtttaatacgtggcaattacggtgt |
29069425 |
T |
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| Q |
201 |
taacataaaccccatgtggtttataaatcaggtcggcctacatgacctac |
250 |
Q |
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| T |
29069424 |
taacataaaccccatgtggtttataagtcaggtcggcctacatgacctac |
29069375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 39559905 - 39559952
Alignment:
| Q |
100 |
accaaaaatgtgttttggtctt-tatctttttaaaaagattcatgttt |
146 |
Q |
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| T |
39559905 |
accaaaattgtgttttggtcctatatctttttaaaaagattcatgttt |
39559952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 43004989 - 43005031
Alignment:
| Q |
110 |
tgttttggtc-tttatctttttaaaaagattcatgttttagtc |
151 |
Q |
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| T |
43004989 |
tgttttggtcctttatctttttaaaaagattcatgttttagtc |
43005031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 37936373 - 37936425
Alignment:
| Q |
126 |
tttttaaaaagattcatgttttagtcctcaagtcataaagcataacataagtt |
178 |
Q |
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| T |
37936373 |
ttttttaaaagattcacgatttagtcctttagtcataaatcataacataagtt |
37936425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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