View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16116_low_1 (Length: 670)
Name: NF16116_low_1
Description: NF16116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16116_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 22 - 670
Target Start/End: Complemental strand, 4287013 - 4286369
Alignment:
| Q |
22 |
ttggatatgtttgctctaatgtttgtaactgaagcttcttaaaatatatatactttcttcatgctttcatcaatcatgttttaagaaaatgtgtttacta |
121 |
Q |
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||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4287013 |
ttggatatgtttgctctaaagtttgtaattgaagcttcttataatatatatactttcttcatgctttcatcaatcatgttttaagaaaatgtgtttacta |
4286914 |
T |
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| Q |
122 |
gttctaatattgatagcgtgctttcattcctaagcataaaaagaaacattgattatcttgactaaataaaacaatctaatcttgaatgaaaacctgtgtg |
221 |
Q |
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| T |
4286913 |
gttctaatattgatagcgtgctttcattcctaagcataaaaagaaacattgattatcttgactaaataaaacaatctaatcttgaatgaaaacctgtgtg |
4286814 |
T |
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| Q |
222 |
ttattattgtttcctcctctcaaaattctgttcatacattactggggagtagttaccaagtgctagtttattgcatgtagtcaaatttatgattttttga |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4286813 |
ttattattgtttcctcctctcaaaattctgttcatacattactggggagtagttgccaagtgctagtttattgcatgtagtcaaatttatgattttttta |
4286714 |
T |
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| Q |
322 |
tgtttcgaattgacgtagaattcagtttgtttggatcaactccttctcaagtgctttggggtggactgatgaattaattgtatgtcatgatcaaacaggt |
421 |
Q |
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| T |
4286713 |
tgtttcaaattgacgtagaattcagtttgtttggatcaactccttctcaagtgctttggggtggactgatg----aattgtatgtcatgatcaaacaggt |
4286618 |
T |
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| Q |
422 |
ggtcataaataaatgttgctgtttattaaaccagttttatgttttgagaccttttatatagcaatgcatgaacattgttcttgtgacacaccaagtaggc |
521 |
Q |
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| T |
4286617 |
ggtcataaataaatgttgctgtttattaaaccagttttatgttttgagaccttttatatagcaatgcatgaacattgttcttgtgacacaccaagtaggc |
4286518 |
T |
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| Q |
522 |
aagtagatttcttagataatatcagtcttatgtccttggttcaatcttcaatataataacttggtggtgagtgattgtaacttatgtatttgcttgcaga |
621 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4286517 |
aagtagatttcttagataatatcagtcttatgtctttggttcaatcttcaatataataacttggtggtgagtgattgtaacttatgtatttgcttgcaga |
4286418 |
T |
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| Q |
622 |
tgagacctctatcgaacttgtagaacatggtactgttatgcccagtgaa |
670 |
Q |
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| T |
4286417 |
tgagacctctatcgaactagtagaacatggtactgttatgcccggtgaa |
4286369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 19972224 - 19972170
Alignment:
| Q |
117 |
tactagttctaatattgatagcgtgctttcattcctaagcataaaaagaaacatt |
171 |
Q |
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| T |
19972224 |
tactagctctaatattgatagcatcacttcattcccaagcataaaaagaaacatt |
19972170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 19972306 - 19972245
Alignment:
| Q |
70 |
tatactttcttcatgctttcatcaatcatgttttaagaaaatgtgtttactagttctaatat |
131 |
Q |
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|||| |||||||||||||| ||||| |||||||| |||||| | |||||||| |||||||| |
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| T |
19972306 |
tataatttcttcatgctttgatcaaccatgttttgagaaaacgcatttactagctctaatat |
19972245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 550
Target Start/End: Complemental strand, 17165498 - 17165434
Alignment:
| Q |
486 |
tgcatgaacattgttcttgtgacacaccaagtaggcaagtagatttcttagataatatcagtctt |
550 |
Q |
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| T |
17165498 |
tgcatgaacattgttcttgtaacacactaattagttaagtagatttccttgataatgtcaatctt |
17165434 |
T |
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