View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16116_low_2 (Length: 524)
Name: NF16116_low_2
Description: NF16116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16116_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 51 - 513
Target Start/End: Complemental strand, 25707636 - 25707184
Alignment:
| Q |
51 |
gtattacactatgtgcatgtttggaactaggatgtctagtttttgtctccgaatgtgatttttacattgatgtttgtttggtt--gtttctatacagata |
148 |
Q |
| |
|
|||| |||||||||||||||||| || | |||||||||||||||||||||||||||||| | |||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
25707636 |
gtatcacactatgtgcatgtttgaaatcaagatgtctagtttttgtctccgaatgtgattctgacatcgatgtttgtttggttttgtttctatacagata |
25707537 |
T |
|
| Q |
149 |
cgagtattgttcctcctcttatctatgctgtgatgggaagctcaagagacattgcaattggacctgtagctgtagtgtctatgcttttatcttccttggt |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25707536 |
cgagtattgttcctcctcttatctatgctgtgatgggaagctcaagagacattgcaattggacctgtagctgtagtgtctatgcttttatcttccttggt |
25707437 |
T |
|
| Q |
249 |
caccaatgtcatagatcctgttgctaatcctcatgcctatagagattttatctttaccgtcaccttcttcgccggaatttttcaagctgcatttggtatt |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25707436 |
caccaatgtcatagatcctgttgctaatcctcatgcctatagagattttatctttaccgtcaccttcttcaccggaatttttcaagctgcatttggtatt |
25707337 |
T |
|
| Q |
349 |
ttcaggtgctggttttctcattagcatgcaatatttcttgtgaatttcttgtaaattttctgttttgcccttataaaccaaatagtttgtttatttatcc |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25707336 |
ttcaggtgctggttttctcattagcatgcaaaattt------------ttgtaaattttctgttttgtccttataaaccaaatagtttgtttatttatcc |
25707249 |
T |
|
| Q |
449 |
ttcaatattttcaggttgggttttcttgtggattttctttcacatgctgcactagttggattcat |
513 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25707248 |
ttcaatatttacaggttgggttttcttgtggattttctttcacatgctgcactagttggattcat |
25707184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 33270784 - 33270696
Alignment:
| Q |
157 |
gttcctcctcttatctatgctgtgatgggaagctcaagagacattgcaattggacctgtagctgtagtgtctatgcttttatcttcctt |
245 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| |||||||| |||| |||||||||| |
|
|
| T |
33270784 |
gttcctcctcttatctatgctgtgatggggagttcaagagaaattgcaattggacctgtagccgtagtgtcactgctgctatcttcctt |
33270696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 460 - 513
Target Start/End: Complemental strand, 33270399 - 33270346
Alignment:
| Q |
460 |
caggttgggttttcttgtggattttctttcacatgctgcactagttggattcat |
513 |
Q |
| |
|
||||||||| ||||||||||||||| | |||||||||||||| || |||||||| |
|
|
| T |
33270399 |
caggttgggatttcttgtggattttttgtcacatgctgcacttgtaggattcat |
33270346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 510
Target Start/End: Original strand, 39751605 - 39751655
Alignment:
| Q |
460 |
caggttgggttttcttgtggattttctttcacatgctgcactagttggatt |
510 |
Q |
| |
|
||||||||| || |||||||||||||| |||||||||||| | |||||||| |
|
|
| T |
39751605 |
caggttggggttccttgtggattttctgtcacatgctgcaattgttggatt |
39751655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University