View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16116_low_4 (Length: 344)

Name: NF16116_low_4
Description: NF16116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16116_low_4
NF16116_low_4
[»] chr8 (3 HSPs)
chr8 (1-328)||(15349126-15349453)
chr8 (232-304)||(4030303-4030375)
chr8 (57-147)||(4962191-4962281)
[»] chr4 (25 HSPs)
chr4 (1-302)||(48898983-48899284)
chr4 (55-307)||(48870857-48871109)
chr4 (55-307)||(48876161-48876413)
chr4 (55-307)||(48886543-48886795)
chr4 (52-250)||(45365789-45365987)
chr4 (119-296)||(45371600-45371774)
chr4 (119-250)||(48864396-48864527)
chr4 (59-190)||(7790381-7790512)
chr4 (57-163)||(7773481-7773587)
chr4 (107-190)||(48156058-48156141)
chr4 (119-250)||(45384459-45384592)
chr4 (107-180)||(7765991-7766064)
chr4 (59-180)||(7771696-7771817)
chr4 (109-190)||(49043797-49043878)
chr4 (108-180)||(7878733-7878805)
chr4 (119-179)||(49038518-49038578)
chr4 (119-174)||(48147358-48147413)
chr4 (110-180)||(48853033-48853103)
chr4 (62-147)||(7237415-7237500)
chr4 (107-180)||(7786813-7786886)
chr4 (119-180)||(7908663-7908724)
chr4 (117-150)||(48903314-48903347)
chr4 (109-192)||(50666666-50666749)
chr4 (119-180)||(7813838-7813899)
chr4 (110-150)||(48861640-48861680)
[»] chr3 (5 HSPs)
chr3 (53-304)||(47451415-47451666)
chr3 (225-303)||(11015007-11015085)
chr3 (119-176)||(11024146-11024203)
chr3 (233-303)||(11005444-11005514)
chr3 (119-164)||(11005583-11005628)
[»] chr5 (5 HSPs)
chr5 (53-163)||(9120058-9120168)
chr5 (119-180)||(42561972-42562033)
chr5 (99-150)||(179399-179450)
chr5 (119-180)||(29688490-29688551)
chr5 (119-177)||(29712083-29712141)
[»] chr1 (2 HSPs)
chr1 (119-163)||(24310577-24310621)
chr1 (112-179)||(24416132-24416199)
[»] chr2 (1 HSPs)
chr2 (233-304)||(29350897-29350968)
[»] chr7 (1 HSPs)
chr7 (110-180)||(48884176-48884246)
[»] chr6 (1 HSPs)
chr6 (122-150)||(21979297-21979325)


Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 15349126 - 15349453
Alignment:
Q  1 aggaaactgtttgagatgcctcatccagatgattttgaacatgatgctggtgattgtggtttgtgggtctttggcgaattttttagtctttggtctacgg 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349126 aggaaactgtttgagatgcctcctccagatgattttgaacatgatgctggtgattgtggtttgtgggtctttggcgaattttttagtctttggtctacgg 15349225  T
Q  101 attatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttcttaatattgatgataatccaac 200  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15349226 attatcctaatgatagctttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttcttaatattgatgatgatccaac 15349325  T
Q  201 tctgtacttttaccctttgtgccgtacaaatagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgtta 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349326 tctgtacttttaccctttgtgccgtacaaagagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgtta 15349425  T
Q  301 gagcgttccccccattgggagagtttat 328  Q
    ||||||||||||||||||||||||||||    
T  15349426 gagcgttccccccattgggagagtttat 15349453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 4030375 - 4030303
Alignment:
Q  232 agtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagagc 304  Q
    ||||||||||||||||||| | ||| ||||  |||||||||||||||||||||||| || |||||| ||||||    
T  4030375 agtggtgatattattggaacatatggtggtactgaattggtgaagtatgatgacaaaggacagttgctagagc 4030303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 4962281 - 4962191
Alignment:
Q  57 tggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaa 147  Q
    |||||||||||| ||||| |||||| | ||||| |||   | ||||||||  |||  |||| |||||||||||||||||||||||||||||    
T  4962281 tggtttgtgggtatttggagaatttctcagtctatggggcatggattatcgcaattgtagagttgaaatatgggtgatgaaagaatacaaa 4962191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 48898983 - 48899284
Alignment:
Q  1 aggaaactgtttgagatgcctcatccagatgattttgaacatgatgctggtgattgtggtttgtgggtctttggcgaattttttagtctttggtctacgg 100  Q
    ||||||||||| |||||| ||| |||||||||||| ||||||  | ||   ||||||||||||||||||||||| || ||||| ||| | ||| || |      
T  48898983 aggaaactgttagagatgtctcctccagatgatttggaacatattcctcaggattgtggtttgtgggtctttggagattttttcagtatatgggctgcaa 48899082  T
Q  101 attatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttcttaatattgatgataatccaac 200  Q
    ||||| ||||||||| | ||||||||||||||||||||||||| ||||| || || |||||||||  || ||||||||||  ||||||||  | ||| ||    
T  48899083 attatgctaatgatacagttgaaatatgggtgatgaaagaatataaagtaaaatcctcttggacagtgactcttgttcttcctattgatggcattcccac 48899182  T
Q  201 tctgtacttttaccctttgtgccgtacaaatagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgtta 300  Q
    | ||||||||||||| |||||| ||||||| |||||  |||||||||||| | ||| ||   ||| ||||||||||||||||||||||||  ||||||||    
T  48899183 tatgtacttttacccattgtgctgtacaaaaagtggctatattattggaacagatggtgaatttggattggtgaagtatgatgacaatggagagttgtta 48899282  T
Q  301 ga 302  Q
    ||    
T  48899283 ga 48899284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 55 - 307
Target Start/End: Original strand, 48870857 - 48871109
Alignment:
Q  55 tgtggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaact 154  Q
    |||||||||||||| ||||| |||||| | ||||| |   ||| |||||||  | || ||| | ||||||| ||||||||||| ||||||||||||||||    
T  48870857 tgtggtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaact 48870956  T
Q  155 cttcttggacaaagattcttgttcttaatattgatgataatccaactctgtacttttaccctttgtgccgtacaaatagtggtgatattattggaataaa 254  Q
    | ||||||||||||| ||||||||||  | ||||||| | | |   |  || ||||| ||| |||||| ||||||| ||||||||||||||||||  | |    
T  48870957 cgtcttggacaaagactcttgttctttctgttgatgacatttccgatgagtccttttccccattgtgctgtacaaaaagtggtgatattattggagcaca 48871056  T
Q  255 tgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagagcgtt 307  Q
    |  |||| ||| |||||||||||||||||||||||| |||||||||| |||||    
T  48871057 tagtggtattggattggtgaagtatgatgacaatggacagttgttagggcgtt 48871109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 55 - 307
Target Start/End: Original strand, 48876161 - 48876413
Alignment:
Q  55 tgtggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaact 154  Q
    |||||||||||||| ||||| |||||| | ||||| |   ||| |||||||  | || ||| | ||||||| ||||||||||| ||||||||||||||||    
T  48876161 tgtggtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaact 48876260  T
Q  155 cttcttggacaaagattcttgttcttaatattgatgataatccaactctgtacttttaccctttgtgccgtacaaatagtggtgatattattggaataaa 254  Q
    | ||||||||||||| ||||||||||  | ||||||| | | |   |  || ||||| ||| |||||| ||||||| ||||||||||||||||||  | |    
T  48876261 cgtcttggacaaagactcttgttctttctgttgatgacatttccgatgagtccttttccccattgtgctgtacaaaaagtggtgatattattggagcaca 48876360  T
Q  255 tgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagagcgtt 307  Q
    |  |||| ||| |||||||||||||||||||||||| |||||||||| |||||    
T  48876361 tagtggtattggattggtgaagtatgatgacaatggacagttgttagggcgtt 48876413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 55 - 307
Target Start/End: Original strand, 48886543 - 48886795
Alignment:
Q  55 tgtggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaact 154  Q
    |||||||||||||| ||||| |||||| | ||||| |   ||| |||||||  | || ||| | ||||||| ||||||||||| ||||||||||||||||    
T  48886543 tgtggtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaact 48886642  T
Q  155 cttcttggacaaagattcttgttcttaatattgatgataatccaactctgtacttttaccctttgtgccgtacaaatagtggtgatattattggaataaa 254  Q
    | ||||||||||||| ||||||||||  | ||||||| | | |   |  || ||||| ||| |||||| ||||||| ||||||||||||||||||  | |    
T  48886643 cgtcttggacaaagactcttgttctttctgttgatgacatttctgatgagtccttttccccattgtgctgtacaaaaagtggtgatattattggagcaca 48886742  T
Q  255 tgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagagcgtt 307  Q
    |  |||| ||| |||||||||||||||||||||||| |||||||||| |||||    
T  48886743 tagtggtattggattggtgaagtatgatgacaatggacagttgttagggcgtt 48886795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 52 - 250
Target Start/End: Complemental strand, 45365987 - 45365789
Alignment:
Q  52 gattgtggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtga 151  Q
    ||||||||||||||||| ||||| |||||||| ||| ||||| ||| |||||||  |||||||| | ||||||||||||||||||||||||| ||||||     
T  45365987 gattgtggtttgtgggtatttggagaatttttcagtttttgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatataaagtgc 45365888  T
Q  152 actcttcttggacaaagattcttgttcttaatattgatgataatccaactctgtacttttaccctttgtgccgtacaaatagtggtgatattattggaa 250  Q
      || ||||||||||||| ||  ||||||  ||||||||  | ||| ||||  ||||||| |||||| |||  |||||| || ||||||||||||||||    
T  45365887 gttcgtcttggacaaagactcacgttcttcctattgatggcattcccactcaatacttttcccctttatgctctacaaaaagcggtgatattattggaa 45365789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 119 - 296
Target Start/End: Complemental strand, 45371774 - 45371600
Alignment:
Q  119 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttcttaatattgatgataatccaactctgtacttttacccttt 218  Q
    ||||||||||||| |||||||||||||||||| | || |||||||| |||| | ||||||||  ||| ||||    |||||||| |||||||| ||| ||    
T  45371774 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttcttcctatcgatggcgttccaactcggtacttttccccatt 45371675  T
Q  219 gtgccgtacaaatagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagtt 296  Q
    |||  ||||||| || |||||||| ||||||| |   | ||||  || |||||||||||||||||||||||| |||||    
T  45371674 gtgttgtacaaaaagcggtgatataattggaaca---gatggtcgtggattggtgaagtatgatgacaatggacagtt 45371600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 119 - 250
Target Start/End: Original strand, 48864396 - 48864527
Alignment:
Q  119 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttcttaatattgatgataatccaactctgtacttttacccttt 218  Q
    |||||||||||||||||||||||||||||||| | || |||||||| |||||||||||||||  |||||||  || | | |||| |||||||   |||||    
T  48864396 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttcttcctattgattttatttccactcggtactttcttccttt 48864495  T
Q  219 gtgccgtacaaatagtggtgatattattggaa 250  Q
     |||  |||||| ||||| |||||||||||||    
T  48864496 atgctctacaaaaagtggcgatattattggaa 48864527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 190
Target Start/End: Original strand, 7790381 - 7790512
Alignment:
Q  59 gtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttc 158  Q
    |||||||||| ||||| |||||| | ||| | ||  ||| |||||||  |||||||| | |||||||||||||||||||||||||||||||| | || ||    
T  7790381 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtc 7790480  T
Q  159 ttggacaaagattcttgttcttaatattgatg 190  Q
    |||||| || | ||||||||||  ||||||||    
T  7790481 ttggactaaaactcttgttctttctattgatg 7790512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 7773587 - 7773481
Alignment:
Q  57 tggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaactct 156  Q
    |||||||||||| ||||| |||| | ||||| | ||| ||| |||| || ||||||||| | |||||||||||||||||||||||||||||||| | ||     
T  7773587 tggtttgtgggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcg 7773488  T
Q  157 tcttgga 163  Q
    |||||||    
T  7773487 tcttgga 7773481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 190
Target Start/End: Complemental strand, 48156141 - 48156058
Alignment:
Q  107 ctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttcttaatattgatg 190  Q
    ||||||| ||| ||||||||||||||||||| |||||||||||| | ||||||||||| || | |||||| |||  ||||||||    
T  48156141 ctaatgaaagagttgaaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactcttgtccttcctattgatg 48156058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 250
Target Start/End: Complemental strand, 45384592 - 45384459
Alignment:
Q  119 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttcttaatattgatg--ataatccaactctgtacttttaccct 216  Q
    ||||||||||||||||||||||||| |||||| | || ||||||||||||| || |||||||  | ||||||  ||| |||  |||| | | ||| ||||    
T  45384592 ttgaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactcgtgttcttccttttgatggtatattccttctctatccctttcccct 45384493  T
Q  217 ttgtgccgtacaaatagtggtgatattattggaa 250  Q
    || |||  |||||| || ||||||||||||||||    
T  45384492 ttatgctctacaaaaagcggtgatattattggaa 45384459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 7765991 - 7766064
Alignment:
Q  107 ctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 180  Q
    ||||||||| | |||||||||||||||||||||||||||||||| | || || ||||| ||||  |||||||||    
T  7765991 ctaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 7766064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 180
Target Start/End: Original strand, 7771696 - 7771817
Alignment:
Q  59 gtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttc 158  Q
    |||||||||| ||||| |||||| | ||| | ||  ||| |||||||  |||||||| | ||| |||||||||||||||||||||||||||| | || ||    
T  7771696 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaagtgcattcgtc 7771795  T
Q  159 ttggacaaagattcttgttctt 180  Q
     ||||| || | ||||||||||    
T  7771796 atggactaaaactcttgttctt 7771817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 49043878 - 49043797
Alignment:
Q  109 aatgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttcttaatattgatg 190  Q
    ||||||| | |||||||||||||||||||||||||||||||| | || || ||||| |||| ||||||| ||  ||||||||    
T  49043878 aatgatatagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatg 49043797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 7878733 - 7878805
Alignment:
Q  108 taatgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 180  Q
    |||||||| | |||||||||||||||||||||||||||||||| | || |||||||  || | ||||||||||    
T  7878733 taatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttctt 7878805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 49038578 - 49038518
Alignment:
Q  119 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttct 179  Q
    |||||||||||||||||||||||||||||||  | || |||||||| |||| |||||||||    
T  49038578 ttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttct 49038518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 48147413 - 48147358
Alignment:
Q  119 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattctt 174  Q
    |||||||||||||||||||||||||||||||| | || |||||||| |||| ||||    
T  48147413 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactctt 48147358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 48853033 - 48853103
Alignment:
Q  110 atgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 180  Q
    |||||| | ||||||||||||| ||||||||||||||||||   || |||||||| |||| ||||||||||    
T  48853033 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 48853103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 7237500 - 7237415
Alignment:
Q  62 tgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaa 147  Q
    ||||||| ||||| |||||| | ||||| ||| ||  |||||||  |||||||| | ||| |||||||||||||||||||||||||    
T  7237500 tgtgggtatttggagaatttctcagtctatgggctcaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaa 7237415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 7786813 - 7786886
Alignment:
Q  107 ctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 180  Q
    ||||||||| | |||||||||||||||||||||||||||| ||| | |  |||||||  |||| ||||||||||    
T  7786813 ctaatgatacaattgaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactcttgttctt 7786886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 7908663 - 7908724
Alignment:
Q  119 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 180  Q
    |||||||||||||||||||||||||||||||| | || |||||||  || | ||||||||||    
T  7908663 ttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttctt 7908724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 150
Target Start/End: Original strand, 48903314 - 48903347
Alignment:
Q  117 atttgaaatatgggtgatgaaagaatacaaagtg 150  Q
    ||||||||||||||||||||||||||||||||||    
T  48903314 atttgaaatatgggtgatgaaagaatacaaagtg 48903347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 50666666 - 50666749
Alignment:
Q  109 aatgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttcttaatattgatgat 192  Q
    ||||||| | ||||| ||||||||||| |||||||||||||| | || |||||||| || | ||||||| || | |||||||||    
T  50666666 aatgatacaattgaattatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgttattcacattgatgat 50666749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 7813838 - 7813899
Alignment:
Q  119 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 180  Q
    |||||||||||||| ||||||||||||||||| | || |||||||  || | ||||||||||    
T  7813838 ttgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgttctt 7813899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 48861640 - 48861680
Alignment:
Q  110 atgatagatttgaaatatgggtgatgaaagaatacaaagtg 150  Q
    |||||| ||||||||||||||| || |||||||||||||||    
T  48861640 atgatacatttgaaatatgggtaataaaagaatacaaagtg 48861680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 53 - 304
Target Start/End: Complemental strand, 47451666 - 47451415
Alignment:
Q  53 attgtggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaa 152  Q
    |||||||||||||||| ||||| |||||| |||||||  ||  |  ||||| || |||||||| | ||||||||||||||||||||||||||||||| ||    
T  47451666 attgtggtttgtgggtatttggagaatttcttagtctaagggttctggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaa 47451567  T
Q  153 ctcttcttggacaaagattcttgttcttaatattgatgataatccaactctgtacttttaccctttgtgccgtacaaatagtggtgatattattggaata 252  Q
     || ||||||  ||||| ||||||||||  ||||||||  | |||  ||| |||||||||||| ||   |  |||||| ||||||||||||||||||| |    
T  47451566 ttcgtcttgggaaaagactcttgttcttcctattgatggcattccctctcagtacttttaccccttaacctctacaaaaagtggtgatattattggaaca 47451467  T
Q  253 aatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagagc 304  Q
     ||| || |   | |||||| |||||| ||||||| || |||||||||||||    
T  47451466 gatgatgataccggattggttaagtataatgacaaaggacagttgttagagc 47451415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 11015085 - 11015007
Alignment:
Q  225 tacaaatagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagag 303  Q
    |||||| ||||||| ||||||||||| ||||| ||||| ||||||||| |||||||||| |||||| |||||| |||||    
T  11015085 tacaaaaagtggtggtattattggaacaaatggtggtggtgaattggtaaagtatgatggcaatggtcagttgctagag 11015007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 11024203 - 11024146
Alignment:
Q  119 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgt 176  Q
    ||||||||||||| |||||||||||||||||| | || |||||||| |||| ||||||    
T  11024203 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 11024146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 11005514 - 11005444
Alignment:
Q  233 gtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagag 303  Q
    ||||| |||||||||| | ||||| ||||  || ||||||||||||||||| |||||| |||||| |||||    
T  11005514 gtggtcatattattgggacaaatggtggtactggattggtgaagtatgatggcaatggtcagttgctagag 11005444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 11005628 - 11005583
Alignment:
Q  119 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggac 164  Q
    ||||||||||||| |||||||||||||||||| | || ||||||||    
T  11005628 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggac 11005583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 9120058 - 9120168
Alignment:
Q  53 attgtggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaa 152  Q
    |||||| | ||||||| ||||| |||||| | ||| | ||| ||| ||||| | ||||||||| | |||||||||||||||||||||||||||||||| |    
T  9120058 attgtgatgtgtgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgca 9120157  T
Q  153 ctcttcttgga 163  Q
     || |||||||    
T  9120158 ttcctcttgga 9120168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 42562033 - 42561972
Alignment:
Q  119 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 180  Q
    |||| ||||||||||||||||||||||||||| | || |||||||| |||||||||||||||    
T  42562033 ttgatatatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgttctt 42561972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 179399 - 179450
Alignment:
Q  99 ggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtg 150  Q
    |||||||  |||||||| | ||||||||||||||||||||||||||||||||    
T  179399 ggattatgataatgatacagttgaaatatgggtgatgaaagaatacaaagtg 179450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 29688490 - 29688551
Alignment:
Q  119 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 180  Q
    |||||||||||||||||||| ||||||| ||| | || ||||||||||||| ||| ||||||    
T  29688490 ttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactctcgttctt 29688551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 29712141 - 29712083
Alignment:
Q  119 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgtt 177  Q
    ||||||||||||||||| || ||||||| ||||  ||||||||||| |||| |||||||    
T  29712141 ttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagactcttgtt 29712083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 24310577 - 24310621
Alignment:
Q  119 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttgga 163  Q
    |||| ||||||||||||||||||||||||||| | ||||||||||    
T  24310577 ttgatatatgggtgatgaaagaatacaaagtgcagtcttcttgga 24310621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 24416132 - 24416199
Alignment:
Q  112 gatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttct 179  Q
    |||||| |||| ||||||||||||||||||||||||| | | || |||||||| || | |||||||||    
T  24416132 gatagagttgatatatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactcttgttct 24416199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 304
Target Start/End: Original strand, 29350897 - 29350968
Alignment:
Q  233 gtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagagc 304  Q
    ||||||||||||||||||   ||| ||||  |||||||||||||||| ||||||| || |||||| ||||||    
T  29350897 gtggtgatattattggaacggatggtggtactgaattggtgaagtattatgacaaaggacagttgctagagc 29350968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 48884176 - 48884246
Alignment:
Q  110 atgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 180  Q
    |||||| | ||||||||| |||||||||||||||||||||| |    |||||||| |||| ||||||||||    
T  48884176 atgataaagttgaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgttctt 48884246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 150
Target Start/End: Complemental strand, 21979325 - 21979297
Alignment:
Q  122 aaatatgggtgatgaaagaatacaaagtg 150  Q
    |||||||||||||||||||||||||||||    
T  21979325 aaatatgggtgatgaaagaatacaaagtg 21979297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University