View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16116_low_9 (Length: 215)
Name: NF16116_low_9
Description: NF16116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16116_low_9 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 1216931 - 1216717
Alignment:
| Q |
1 |
catgcagctccaattctgataagcatattactaacctaacctcccatcttttatttctaccaaatacaaagcatgctaactgctaagatgacattaggtc |
100 |
Q |
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| T |
1216931 |
catgcagcaccaattctgataagcatattactaacctaacctcccatattttatttctaccaaatacaaagcatgctaactgctaagatgacattagggc |
1216832 |
T |
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| Q |
101 |
ccaattgccttatcatgaacagcaagccataatagatagcaaaaagaccaatttaaaggttgaaaatttgatattgatattacacacatctacatgcttc |
200 |
Q |
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| T |
1216831 |
ccaattgccttatcataaacagcaagccataatagatagcaaaaagaccaatttaaaggttgaaaatttgatattgatattacacacatctacatgcttc |
1216732 |
T |
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| Q |
201 |
atgcttgtgttccaa |
215 |
Q |
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| T |
1216731 |
atgcttgtgttccaa |
1216717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 41103675 - 41103641
Alignment:
| Q |
3 |
tgcagctccaattctgataagcatattactaacct |
37 |
Q |
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| T |
41103675 |
tgcagctccaattctgataagcatattactaacct |
41103641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 41089288 - 41089252
Alignment:
| Q |
2 |
atgcagctccaattctgataagcatattactaaccta |
38 |
Q |
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| T |
41089288 |
atgcagctccaattctcataagcatattactaaccta |
41089252 |
T |
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