View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16117_high_10 (Length: 277)

Name: NF16117_high_10
Description: NF16117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16117_high_10
NF16117_high_10
[»] chr5 (5 HSPs)
chr5 (25-261)||(27553565-27553801)
chr5 (195-260)||(1275160-1275225)
chr5 (1-33)||(27553341-27553373)
chr5 (190-236)||(27784-27830)
chr5 (195-260)||(2075796-2075861)
[»] chr4 (8 HSPs)
chr4 (190-260)||(45205170-45205240)
chr4 (218-260)||(30853334-30853376)
chr4 (190-260)||(35690194-35690264)
chr4 (195-260)||(1777337-1777402)
chr4 (195-260)||(48174415-48174480)
chr4 (195-260)||(53707689-53707754)
chr4 (217-257)||(1793377-1793417)
chr4 (212-260)||(45094484-45094532)
[»] chr1 (5 HSPs)
chr1 (190-260)||(19936412-19936482)
chr1 (217-258)||(8391689-8391730)
chr1 (190-261)||(4379895-4379966)
chr1 (190-260)||(9599716-9599786)
chr1 (189-258)||(10200486-10200555)
[»] chr6 (1 HSPs)
chr6 (190-260)||(28027147-28027217)
[»] chr8 (3 HSPs)
chr8 (212-260)||(29735718-29735766)
chr8 (195-260)||(36545042-36545107)
chr8 (192-245)||(41444633-41444686)
[»] chr7 (3 HSPs)
chr7 (212-260)||(42187383-42187431)
chr7 (190-260)||(43281142-43281212)
chr7 (190-246)||(7189569-7189625)
[»] chr3 (1 HSPs)
chr3 (190-246)||(30345417-30345469)
[»] chr2 (2 HSPs)
chr2 (195-260)||(4807487-4807552)
chr2 (195-260)||(8180675-8180740)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 25 - 261
Target Start/End: Original strand, 27553565 - 27553801
Alignment:
Q  25 ttacaattatactgattcaataatattatttttgatgtaaaaaagaagtaaaataatgttattttgataattttttattaactgtccaacaccttgtatg 124  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27553565 ttacaattattctgattcaataatattatttttgatgtaaaaaagaagtaaaataatgttattttgataattttttattaactgtccaacaccttgtatg 27553664  T
Q  125 gatacagtacatatacaatttgatattttagttacttattttctctctcaataagtcattttaatagaaccaacatgaaaattaaggaagcatagcggag 224  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| || |||||||||||||||||||||||  ||||||||    
T  27553665 gatacagtacatatacaatttgatcttttagttacttattttctctctcactaagtcactttactaaaaccaacatgaaaattaaggaagtgtagcggag 27553764  T
Q  225 atgaagatgttgtgttggatgaatagtaagactagaa 261  Q
    |||||||||||||||||||||||||||||||||||||    
T  27553765 atgaagatgttgtgttggatgaatagtaagactagaa 27553801  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 1275160 - 1275225
Alignment:
Q  195 caacatgaaaattaaggaagcatagcggagatgaagatgttgtgttggatgaatagtaagactaga 260  Q
    |||||||| ||| ||| ||||||||| ||||||| ||||||| ||||||||| | |||||||||||    
T  1275160 caacatgagaatcaagtaagcatagcagagatgaggatgttgcgttggatgagtggtaagactaga 1275225  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 27553341 - 27553373
Alignment:
Q  1 cattgcttggcttttgtttcattattacaatta 33  Q
    |||||||||||||||||||||||||||||||||    
T  27553341 cattgcttggcttttgtttcattattacaatta 27553373  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 27784 - 27830
Alignment:
Q  190 agaaccaacatgaaaattaaggaagcatagcggagatgaagatgttg 236  Q
    ||||||||||||| ||||||| ||||||| ||||||||| |||||||    
T  27784 agaaccaacatgagaattaagtaagcataacggagatgaggatgttg 27830  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 2075861 - 2075796
Alignment:
Q  195 caacatgaaaattaaggaagcatagcggagatgaagatgttgtgttggatgaatagtaagactaga 260  Q
    |||||||| ||||||| |||  |||| ||||||| ||||||| ||||||||| | |||||||||||    
T  2075861 caacatgagaattaagtaagtgtagcagagatgaggatgttgcgttggatgagttgtaagactaga 2075796  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 45205240 - 45205170
Alignment:
Q  190 agaaccaacatgaaaattaaggaagcatagcggagatgaagatgttgtgttggatgaatagtaagactaga 260  Q
    |||||||||| || ||| ||| |||| |||||||||||| ||||||||||||||||| | |||||||||||    
T  45205240 agaaccaacacgagaatcaagtaagcgtagcggagatgaggatgttgtgttggatgagtggtaagactaga 45205170  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 30853334 - 30853376
Alignment:
Q  218 agcggagatgaagatgttgtgttggatgaatagtaagactaga 260  Q
    |||||||||||||||||||||||||||| || |||||||||||    
T  30853334 agcggagatgaagatgttgtgttggatgtatggtaagactaga 30853376  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 35690194 - 35690264
Alignment:
Q  190 agaaccaacatgaaaattaaggaagcatagcggagatgaagatgttgtgttggatgaatagtaagactaga 260  Q
    ||||||||||||| ||| ||| |||  |||| ||||||| ||||||| ||||||||| |||||||||||||    
T  35690194 agaaccaacatgagaatcaagtaagtgtagccgagatgaggatgttgcgttggatgagtagtaagactaga 35690264  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 1777402 - 1777337
Alignment:
Q  195 caacatgaaaattaaggaagcatagcggagatgaagatgttgtgttggatgaatagtaagactaga 260  Q
    |||||||||||| ||| ||| |||||  |||||| ||||||| ||||||||| | |||||||||||    
T  1777402 caacatgaaaatcaagtaagtatagcaaagatgaggatgttgcgttggatgagtggtaagactaga 1777337  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 48174480 - 48174415
Alignment:
Q  195 caacatgaaaattaaggaagcatagcggagatgaagatgttgtgttggatgaatagtaagactaga 260  Q
    |||||||||||| ||| ||| |||||  |||||| ||||||| ||||||||| | |||||||||||    
T  48174480 caacatgaaaatcaagtaagtatagcaaagatgaggatgttgcgttggatgagtggtaagactaga 48174415  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 53707689 - 53707754
Alignment:
Q  195 caacatgaaaattaaggaagcatagcggagatgaagatgttgtgttggatgaatagtaagactaga 260  Q
    |||||||| ||| ||| |||  |||| ||||||| ||||||| ||||||||| |||||||||||||    
T  53707689 caacatgagaatcaagtaagtgtagcagagatgaggatgttgcgttggatgagtagtaagactaga 53707754  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 1793377 - 1793417
Alignment:
Q  217 tagcggagatgaagatgttgtgttggatgaatagtaagact 257  Q
    |||||||||||| ||||||||||||||||||  ||||||||    
T  1793377 tagcggagatgaggatgttgtgttggatgaacggtaagact 1793417  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 45094532 - 45094484
Alignment:
Q  212 aagcatagcggagatgaagatgttgtgttggatgaatagtaagactaga 260  Q
    |||||||| |||||||| ||||||||||||||||  |||||| ||||||    
T  45094532 aagcatagtggagatgaggatgttgtgttggatgtgtagtaatactaga 45094484  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 19936412 - 19936482
Alignment:
Q  190 agaaccaacatgaaaattaaggaagcatagcggagatgaagatgttgtgttggatgaatagtaagactaga 260  Q
    ||||||||||||| ||| ||  |||||||||||||||||  |||||||||||||||| | |||||||||||    
T  19936412 agaaccaacatgagaatcaaataagcatagcggagatgagaatgttgtgttggatgagtggtaagactaga 19936482  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 8391689 - 8391730
Alignment:
Q  217 tagcggagatgaagatgttgtgttggatgaatagtaagacta 258  Q
    |||||||||||||||||||||||||||||| | |||||||||    
T  8391689 tagcggagatgaagatgttgtgttggatgagtggtaagacta 8391730  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 261
Target Start/End: Original strand, 4379895 - 4379966
Alignment:
Q  190 agaaccaacatgaaaattaaggaagcatagcggagatgaagatgttgtgttggatgaatagtaagactagaa 261  Q
    |||||||||| |||||| ||  |||| |||| ||||||| ||||||||||||||||  | ||||||||||||    
T  4379895 agaaccaacacgaaaataaataaagcttagctgagatgaggatgttgtgttggatgtgtggtaagactagaa 4379966  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 9599786 - 9599716
Alignment:
Q  190 agaaccaacatgaaaattaaggaagcatagcggagatgaagatgttgtgttggatgaatagtaagactaga 260  Q
    ||||||||||  | ||| ||| |||| |||| ||||||| ||||||||||||||||| | |||||||||||    
T  9599786 agaaccaacacaataatcaagtaagcgtagcagagatgaggatgttgtgttggatgagtggtaagactaga 9599716  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 10200555 - 10200486
Alignment:
Q  189 tagaaccaacatgaaaattaaggaagcatagcggagatgaagatgttgtgttggatgaatagtaagacta 258  Q
    |||||||||||||| ||| ||| |||| |||||||||||| ||| ||| ||| ||||| | |||||||||    
T  10200555 tagaaccaacatgagaatgaagtaagcgtagcggagatgaggatattgcgttagatgagttgtaagacta 10200486  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 28027217 - 28027147
Alignment:
Q  190 agaaccaacatgaaaattaaggaagcatagcggagatgaagatgttgtgttggatgaatagtaagactaga 260  Q
    ||||||||||||| ||| ||| ||||||||| |||| || |||||| |||||||||| | |||||||||||    
T  28027217 agaaccaacatgagaatcaagtaagcatagcagagacgaggatgttatgttggatgagtggtaagactaga 28027147  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 29735718 - 29735766
Alignment:
Q  212 aagcatagcggagatgaagatgttgtgttggatgaatagtaagactaga 260  Q
    |||| ||| |||||||| ||||||||||||||||||| |||||||||||    
T  29735718 aagcgtagtggagatgaggatgttgtgttggatgaatggtaagactaga 29735766  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 36545042 - 36545107
Alignment:
Q  195 caacatgaaaattaaggaagcatagcggagatgaagatgttgtgttggatgaatagtaagactaga 260  Q
    |||||||| ||| ||| |||  |||| ||||||| ||||||||||||||||| | |||||||||||    
T  36545042 caacatgagaatcaagtaagtgtagcagagatgaggatgttgtgttggatgagtggtaagactaga 36545107  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 41444686 - 41444633
Alignment:
Q  192 aaccaacatgaaaattaaggaagcatagcggagatgaagatgttgtgttggatg 245  Q
    ||||||||  ||||| || ||| |||||||||||||| ||||||||||||||||    
T  41444686 aaccaacacaaaaataaaagaaacatagcggagatgaggatgttgtgttggatg 41444633  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 42187383 - 42187431
Alignment:
Q  212 aagcatagcggagatgaagatgttgtgttggatgaatagtaagactaga 260  Q
    |||| |||||||||||| ||||||||||||||||  |||||||||||||    
T  42187383 aagcgtagcggagatgaggatgttgtgttggatgtgtagtaagactaga 42187431  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 43281142 - 43281212
Alignment:
Q  190 agaaccaacatgaaaattaaggaagcatagcggagatgaagatgttgtgttggatgaatagtaagactaga 260  Q
    ||||||||||||| ||| ||  |||||| | |||||| | |||||||||||||||| || |||||||||||    
T  43281142 agaaccaacatgagaataaattaagcattgtggagataaggatgttgtgttggatgcatggtaagactaga 43281212  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 7189625 - 7189569
Alignment:
Q  190 agaaccaacatgaaaattaaggaagcatagcggagatgaagatgttgtgttggatga 246  Q
    ||||||||||  ||||| ||| |||||||| |||||||| |||||||||||| ||||    
T  7189625 agaaccaacacaaaaatcaagtaagcatagtggagatgaggatgttgtgttgaatga 7189569  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 30345417 - 30345469
Alignment:
Q  190 agaaccaacatgaaaattaaggaagcatagcggagatgaagatgttgtgttggatga 246  Q
    ||||||||||||||||||||| |    |||||||||||| |||||||||||||||||    
T  30345417 agaaccaacatgaaaattaagta----tagcggagatgaggatgttgtgttggatga 30345469  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 4807487 - 4807552
Alignment:
Q  195 caacatgaaaattaaggaagcatagcggagatgaagatgttgtgttggatgaatagtaagactaga 260  Q
    |||||||| ||||||| |||  |||| ||||||| ||||||| ||||||||||| |||||| ||||    
T  4807487 caacatgagaattaagtaagtgtagcagagatgaggatgttgcgttggatgaatggtaagaataga 4807552  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 8180675 - 8180740
Alignment:
Q  195 caacatgaaaattaaggaagcatagcggagatgaagatgttgtgttggatgaatagtaagactaga 260  Q
    |||||||| ||| ||| |||  |||| ||||||| ||||||||||||||||| | |||||||||||    
T  8180675 caacatgagaatcaagtaagtgtagcagagatgaggatgttgtgttggatgagtggtaagactaga 8180740  T

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