View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16117_high_11 (Length: 250)
Name: NF16117_high_11
Description: NF16117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16117_high_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 47192937 - 47192700
Alignment:
| Q |
13 |
aatattgtgagaatctcttccattggccaacaacgtcttaggaaaacaatcatatgtagcaacaccattgaatttgaattgaacagctttgcatttttca |
112 |
Q |
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| T |
47192937 |
aatattgtgagaatctcttccattggccaacaacgtcttaggaaaacaatcatatgtagcaacaccattgaatttgaattgaacagctttgcatttttca |
47192838 |
T |
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| Q |
113 |
caaagatccaaacacaatttttgacattgcttcaagcttgtcacttttgctacatacaaatcatagccatacaactccatgttttgaagatgaagaaaac |
212 |
Q |
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| T |
47192837 |
caaagatccaaacacaacttttgacattgcttcaagcttgtcacttttgctacatacaaatcatagccatacaactccatgttttgaagatgaagaaaac |
47192738 |
T |
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| Q |
213 |
cgaaatcctcaacgcgagcactgtcgcaagaaagatca |
250 |
Q |
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| T |
47192737 |
cgaaatcctcaacgcgagcactgtcgcaagaaagatca |
47192700 |
T |
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