View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16117_low_11 (Length: 351)
Name: NF16117_low_11
Description: NF16117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16117_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 33298680 - 33298339
Alignment:
| Q |
1 |
tcagttttcgttgtgaacattttagttttaattccaaggaaaccctttagctgttgaagggcaattgttatggcagcaccccccataaaaccaacaatag |
100 |
Q |
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| T |
33298680 |
tcagttttcgttgtgaacattttagttttaatgccaaggaaaccctttagctgttgaagggcaattgtgatagcagcaccccccataaaaccgacaatag |
33298581 |
T |
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| Q |
101 |
cagcatgggataggaagtcaaccaagaatcctaatctgattttttgacagaaaaacaaaataaccgattcagttataagatcatcatggtatattaagta |
200 |
Q |
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| T |
33298580 |
cagcatgggataggaagtcaatcaagaaccctaatctgattttttgacagaaaaacaaaagaaccaatccagttataagaccatcatggtatattaagaa |
33298481 |
T |
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| Q |
201 |
gtgtaacattagtagcagctggtagtacatgtatatccggtgtttgcgttagtgcttcgtatgatatacctgaaaatcccaagagttgcttgtgtaatcc |
300 |
Q |
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| T |
33298480 |
gtgtaacattagtagcagctggtagtacatgtatatccggtgtctgggttagtgcttcgtatgatatacctgaaaatcccaagagttgcttgtgtaatcc |
33298381 |
T |
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| Q |
301 |
cagcnnnnnnngtggctgtaaaagctagacgtcgatattctt |
342 |
Q |
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| T |
33298380 |
cagcaaaaaaagtggctgtaaaagccagacgtcgatattctt |
33298339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 25719799 - 25719699
Alignment:
| Q |
34 |
ccaaggaaaccctttagctgttgaagggcaattgttatggcagcaccccccataaaaccaacaatagcagcatgggataggaagtcaaccaagaatccta |
133 |
Q |
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| T |
25719799 |
ccaaggaaacccttaagttgttgaagagctattgtgatggcagctccccccataaaaccgactattgcagcatgtgataggaaatcaatcaaaaatccta |
25719700 |
T |
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| Q |
134 |
a |
134 |
Q |
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| T |
25719699 |
a |
25719699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 1493370 - 1493294
Alignment:
| Q |
52 |
tgttgaagggcaattgttatggcagcaccccccataaaaccaacaatagcagcatgggataggaagtcaaccaagaa |
128 |
Q |
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||||| || ||||| || |||||||| || ||||| || |||||||| |||||||| ||||||||||||| |||||| |
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| T |
1493370 |
tgttggagtgcaatagtaatggcagctccacccatgaatccaacaatggcagcatgagataggaagtcaatcaagaa |
1493294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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