View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16117_low_13 (Length: 319)
Name: NF16117_low_13
Description: NF16117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16117_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 40111663 - 40111963
Alignment:
| Q |
1 |
actttcgagtggaaccaaggatccacccacactaataaacaatgtatacgttctattaaatatccaaaataaccccatggaaaaatccaaaatttttcat |
100 |
Q |
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| T |
40111663 |
actttcgagtggaaccaaggatccacccacactaataaacaatgtatacgttctattaaatatccaaaataaccccatggaaaaatccaaaatttttcat |
40111762 |
T |
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| Q |
101 |
atggtattgagagatacaaataatacagacttctttcttctacaaaagccacgattagaaaagcatattaagattaatcaacaatgaattggtccaagtg |
200 |
Q |
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| T |
40111763 |
atggtatttagagatacaaataatacagacttctttcttctacaaaagccacgattagaaaagcatattaagattaatcaacaatgaattgttccaagtg |
40111862 |
T |
|
| Q |
201 |
gtaaggaactcaaatcccttaagcatgtcgttaattggatcatgcttatggagaaaaaatctgttgggcggggagaatccaccttatgtgccctatatgt |
300 |
Q |
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| T |
40111863 |
gtaaggaactcaaatcccttaagcatgtcgttaattggatcatgcgtatggagaaaaaatctgttgggcggggagaatccaccttatgtgccctatatgt |
40111962 |
T |
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| Q |
301 |
t |
301 |
Q |
| |
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| T |
40111963 |
t |
40111963 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 43460320 - 43460271
Alignment:
| Q |
179 |
caacaatgaattggtccaagtggtaaggaactcaaatcccttaagcatgt |
228 |
Q |
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| T |
43460320 |
caacaatggattggtccaagtggtaagggacttgaaccccttaagcatgt |
43460271 |
T |
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