View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16117_low_18 (Length: 250)
Name: NF16117_low_18
Description: NF16117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16117_low_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 39169970 - 39170200
Alignment:
| Q |
16 |
atccaaaacacatttcctatggtactcgtaaggatgagtagccatctagggtttaatatattcatatttaaatatttatttaatgatataatttcttgaa |
115 |
Q |
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| T |
39169970 |
atccaaaacacatttcctatggtactcgtaaggatgagtagccatctagggtttaatatattcatatttaaatatttatttaatgatataatttcttgaa |
39170069 |
T |
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| Q |
116 |
tactcctctaataatatgaatttaatttgtcaatatataattaatcttttaattttatggaacaaatgtgtatgaataaaacttttgaaaaatgattttt |
215 |
Q |
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| T |
39170070 |
tactcctctaataatatgaatttaatttgtca----ataattaatcttttaattttatggaacaaatgtgcatgaataaaacttttgaaaaatgattttt |
39170165 |
T |
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| Q |
216 |
ccatgagattaagatattaatcataattaattttt |
250 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
39170166 |
ccatgagattaagatattaatcataattaattttt |
39170200 |
T |
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