View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16117_low_19 (Length: 248)
Name: NF16117_low_19
Description: NF16117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16117_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 27553290 - 27553046
Alignment:
| Q |
1 |
ccgcatgcatttgtaagacaagacacccctatatgtatgtatcttgttgactaactttgtagccatt-gagaatttgtgactttctttagtggcagtcct |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27553290 |
ccgcatgcatttgtaagacaagacacccctatatgtatgtatcttgttgactaactttgtagccatttgagaatttgtgactttctttagtggcagtcct |
27553191 |
T |
|
| Q |
100 |
atactagctttaattcttcaaaaggagaggttaatattttaaattttttgactgatcattactttatactcttgtgctatcacaaaatataatttgaata |
199 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27553190 |
atactagctttaattcttcaaaaggagaggttaatattttaaattttttgactgatcattactttatactcttgtgctatcacaaaatataatttgaata |
27553091 |
T |
|
| Q |
200 |
tcctaatttgatatatatggtcagacctttttagttcttctcagt |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27553090 |
tcctaatttgatatatatggtcagacctttttagttcttatcagt |
27553046 |
T |
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