View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16117_low_2 (Length: 491)
Name: NF16117_low_2
Description: NF16117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16117_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 30647440 - 30647622
Alignment:
| Q |
18 |
gttcaatttcttcgaggaaaccgccgtcgcaatcaggacagacgacggtttcctgtctgcttaatcttacaaaacgattgcatctataacaccaataaga |
117 |
Q |
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| T |
30647440 |
gttcaatttcttcgaggaaaccgccgtcgcaatcagggcagacgacggtttcctgtctgcttaatcttacaaaacgattgcatctataacaccaataaga |
30647539 |
T |
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| Q |
118 |
tgttgtctctgacatagtgtccgtctgaacgctagtaataataattaccagatctcttgtaagatcaaaattcaaatgaataa |
200 |
Q |
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| T |
30647540 |
tgttgtctctgacatagtgcccgtctaaacgctagtaataataattaccagatctcttgtaagatcaaaattcaaatgaataa |
30647622 |
T |
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Target: chr3; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 302 - 472
Target Start/End: Original strand, 30647743 - 30647913
Alignment:
| Q |
302 |
tgatgtgtcgaagataacaaagaaagcgcgtattgatttgttggcgtgtctacaacgcttttatttatgtgacacgtggagttatgcagttggatggtat |
401 |
Q |
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| T |
30647743 |
tgatgtgtcgaagataacaaagaaagcgcgtattgatttgttggcgtgtctacaacgcttttatttatgtgacacgtggagttatgcagttggatggtat |
30647842 |
T |
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| Q |
402 |
ccaaacgacagataggtaaacgttttctcggtatcggctggatggcttcagctttgttatgtttacgggat |
472 |
Q |
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| T |
30647843 |
ccaaacgacagataggtaaacgttttctctgtatcggctggatggcttgagctttgttatgtttacgggat |
30647913 |
T |
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