View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16117_low_20 (Length: 241)
Name: NF16117_low_20
Description: NF16117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16117_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 11612732 - 11612946
Alignment:
| Q |
20 |
tgtgagagtggacctgttacagttcagctggtctttatcttcaacatgaagccttttttaattttcatgtttctatatagtttggtatgatgtaatctag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11612732 |
tgtgagagtggacctgttacagttcagctggtctttatcttcaacatgaagccttttttaattttcatgtttctatatagtttggtatgatgtaatctag |
11612831 |
T |
|
| Q |
120 |
cttctgcttttgtcctcactctaattgattttgtaaattatttccattgatctagtttcttctgcatgtttggtttgccttttagtcttaaggtcctttt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11612832 |
cttctgcttttgtcctcactctaattgattttgtaaagtatttccattgatctagtttcttctgcatgtttggtttgccttttagtcttaaggtcctttt |
11612931 |
T |
|
| Q |
220 |
ctttttcctttgctt |
234 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11612932 |
ctttttcctttgctt |
11612946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University