View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16117_low_22 (Length: 229)
Name: NF16117_low_22
Description: NF16117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16117_low_22 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 29687978 - 29687756
Alignment:
| Q |
6 |
acctctaatatcaagatctaagaaagatgggtgaggagatgaaaaatccatgtccgaagaagaagaactatcataatcatattcctcaaataagaaacta |
105 |
Q |
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| T |
29687978 |
acctctaatatcaagatctaagaaagatggatgaggagatgaaaaatccatgtctgaagaagaagaactatcataatcatattcctcaaataagaaacta |
29687879 |
T |
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| Q |
106 |
atgtctggtgaataagaagcactatcatcgtgaagcgatgtttcaaaatctatagatagagattcaagatctggatttatgaacagaattctaggagtgt |
205 |
Q |
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| T |
29687878 |
atgtccggtgaataagaagcactatcatcgtgaagcgatgtttcaaaatctatagatagagattcaagatctggatttatgaacagaattctaggagtgt |
29687779 |
T |
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| Q |
206 |
gtgccttggcgggtaagttgaaaa |
229 |
Q |
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| T |
29687778 |
gtgcattggc-ggtaagttgaaaa |
29687756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 29712728 - 29712842
Alignment:
| Q |
114 |
tgaataagaagcactatcatcgtgaagcgatgtttcaaaatctatagatagagattcaagatctggatttatgaacagaattctaggagtgtgtgccttg |
213 |
Q |
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| T |
29712728 |
tgaataggaagcactatcatcgtagagtgatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttg |
29712827 |
T |
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| Q |
214 |
gcgggtaagttgaaaa |
229 |
Q |
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| T |
29712828 |
gc-ggtaagttgaaaa |
29712842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 198
Target Start/End: Complemental strand, 29696034 - 29695887
Alignment:
| Q |
51 |
atccatgtccgaagaagaagaactatcataatcatattcctcaaataagaaactaatgtctggtgaataagaagcactatcatcgtgaagcgatgtttca |
150 |
Q |
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| T |
29696034 |
atccatgtccgacgaagaagaactatagtaatcttcatcgtcaatcaaaaaactaatgtccgttgtatatacagcactatcatcgttaagcgataattca |
29695935 |
T |
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| Q |
151 |
aaatctatagatagagattcaagatctggatttatgaacagaattcta |
198 |
Q |
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| T |
29695934 |
agatctatagatagagattgaagatatggagttatcaacataattcta |
29695887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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