View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16117_low_3 (Length: 483)
Name: NF16117_low_3
Description: NF16117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16117_low_3 |
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| [»] scaffold0449 (3 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 11630 - 11850
Alignment:
| Q |
10 |
aagaatatggttactttgggtgggaaatcactccggttgaagtctctggtggaaggggaagaccatcaacaattgttgacaaggatgagggcctaggaaa |
109 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11630 |
aagaaaatggttactttgggtgggaaatcactccggttgaagtctctggtggaaggggaagaccatcaacaattgttgacaaggatgagggactaggaaa |
11729 |
T |
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| Q |
110 |
ggtaatcgcccaaataacttgaaacatggcaatactcattcttgtgtgcatatgcatatgatggatttgcaagatacatatacataga----ctctctgt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| |
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| T |
11730 |
ggtaatcgcccaaataacttgaaacatggcaatactcattcttgtgtgcatatgcatatgacggacctgcaagatacatatacatagactctctctctgt |
11829 |
T |
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| Q |
206 |
attgagtaatcttagtttccc |
226 |
Q |
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||||||||||||||||||||| |
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| T |
11830 |
attgagtaatcttagtttccc |
11850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0449; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 330 - 468
Target Start/End: Original strand, 11982 - 12120
Alignment:
| Q |
330 |
taacaaaaattctttaacactatcaggaagatcctgtgtaagtgcaacaaaatccttaatataatgtcctcaaaataagggccatcaaaatttgattact |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11982 |
taacaaaaattctttaacactatcaggaagatcctgtgtaagtgcaacaaaatccttaatataatgtcctcaaaataagggccatcaaaatttgattact |
12081 |
T |
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| Q |
430 |
actannnnnnnagtacctccacataataacacctaattg |
468 |
Q |
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| T |
12082 |
actatttttttagtacctccacataataacacctaattg |
12120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0449; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 11903 - 11959
Alignment:
| Q |
279 |
cttgacattgttttcataataaaattaactgttacaacattacaattcaaataacaa |
335 |
Q |
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| T |
11903 |
cttgacattgttttcataataaaattaactgttacaacattacaattcaaataacaa |
11959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 43050575 - 43050355
Alignment:
| Q |
10 |
aagaatatggttactttgggtgggaaatcactccggttgaagtctctggtggaaggggaagaccatcaacaattgttgacaaggatgagggcctaggaaa |
109 |
Q |
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| T |
43050575 |
aagaaaatggttactttgggtgggaaatcactccggttgaagtctctggtggaaggggaagaccatcaacaattgttgacaaggatgagggtctaggaaa |
43050476 |
T |
|
| Q |
110 |
ggtaatcgcccaaataacttgaaacatggcaatactcattcttgtgtgcatatgcatatgatggatttgcaagatacatatacatagact----ctctgt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||| |
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| T |
43050475 |
ggtaatcgcccaaataacttgaaacatggcaatactcattcttgtgtgcatatgcatatgacggacctgcaagatacatatacatagactctctctctgt |
43050376 |
T |
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| Q |
206 |
attgagtaatcttagtttccc |
226 |
Q |
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||||||||||||||||||||| |
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| T |
43050375 |
attgagtaatcttagtttccc |
43050355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 330 - 468
Target Start/End: Complemental strand, 43050223 - 43050085
Alignment:
| Q |
330 |
taacaaaaattctttaacactatcaggaagatcctgtgtaagtgcaacaaaatccttaatataatgtcctcaaaataagggccatcaaaatttgattact |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43050223 |
taacaaaaattctttaacactatcaggaagatcctgtgtaagtgcaacaaaatccttaatataatgtcctcaaaataagggccatcaaaatttgatttct |
43050124 |
T |
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| Q |
430 |
actannnnnnnagtacctccacataataacacctaattg |
468 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
43050123 |
actatttttttagtacctccacataataacacctaattg |
43050085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 43050302 - 43050246
Alignment:
| Q |
279 |
cttgacattgttttcataataaaattaactgttacaacattacaattcaaataacaa |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43050302 |
cttgacattgttttcataataaaattaactgttacaacattacaattcaaataacaa |
43050246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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