View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16117_low_4 (Length: 473)
Name: NF16117_low_4
Description: NF16117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16117_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 17 - 457
Target Start/End: Original strand, 52454645 - 52455085
Alignment:
| Q |
17 |
tggtgtaagtcctttttcaaggcttgcatgcaacacatcaatccaacgttgtccaccaccaacatctacatatttatcaaacataacaattccattccca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
52454645 |
tggtgtaagtcctttttcaaggcttgcatgcaacacatcaatccaacgttgtccaccaccaacatctacatatttatcaaacacaacaattccattccca |
52454744 |
T |
|
| Q |
117 |
ttatttctaagctcattattcaattcagtcatgttcaccacaatcccatcatttgtcatggattgtccattaaccgaatgtccttgccctcttgctgcta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52454745 |
ttatttctaagctcattattcaattcagtcatgttcaccacaatcccatcatttgtcatggattgtccattaaccgaatgtccttgccctcttgctgcta |
52454844 |
T |
|
| Q |
217 |
tagtaaaagggataggaagtgaatttgagaatttgatcaatttagatatgtcattaatagaagatggtgcaaaaattgcaaaagggttttggtgaattat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52454845 |
tagtaaaagggataggaagtgaatttgagaatttgatcaatttagatatgtcattaatagaagatggtgcaaaaattgcaaaagggttttggtgaattat |
52454944 |
T |
|
| Q |
317 |
gtggccaaaatcggttgaggctagtgaaatggtcacggggtcacgactaagcatttggaggatttcttttggtgcatctaagggtgaccatggttgtagc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52454945 |
gtggccaaaatcggttgaggctagtgaaatggtcacggggtcacgactaagcatttggaggatttcttttggtgcatctaagggtgaccatggttgtagt |
52455044 |
T |
|
| Q |
417 |
tgtgcttgttttgtgtgcactacaatattaagacatagtag |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52455045 |
tgtgcttgttttgtgtgcactacaatattaagacatagtag |
52455085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University