View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16117_low_5 (Length: 445)
Name: NF16117_low_5
Description: NF16117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16117_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 37818578 - 37818163
Alignment:
| Q |
18 |
actaacctcaccaatttcattcatttgaagctttagcaacctgtagtaccaattgtaagttgactttttctgttgtcttaaggccatattttgggaatgt |
117 |
Q |
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| T |
37818578 |
actaacctcaccaatttcattcatttgaagctatagcaacctgtagtaccaattgtaagttgattttttctgttgtcttaaggccatattttgggaatgt |
37818479 |
T |
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| Q |
118 |
gttaatttcatgtcaattcaagtgactgaactctcttttttgttgctatatataagtagtgtctgtttatttgaacatat--gatattgttagattacat |
215 |
Q |
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| T |
37818478 |
gttaatttcatgtcaattcaagtgactgaactctcttttttgttgctatatataagtagtgtctgtttatttgaacatatatgatattgttagattacat |
37818379 |
T |
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| Q |
216 |
ttgcaggagaattccaaattggggagaatatagaaccgttagatcctgaaacagttgatagcatagttcaatatggaagatttggaaggtcaatgaatgt |
315 |
Q |
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| T |
37818378 |
ttgcaggagaattccaaattggggagaatatagaaccattagatcctgaaacagttgatagcatagttcaatatggaagatttggaaggtcaatgaatgt |
37818279 |
T |
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| Q |
316 |
ccaagctgttggttattcccttgtgtatagtcagctatatccttttgaaggacttcagaactatacttctggaattatacatcatgttcgtctcacaggt |
415 |
Q |
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| T |
37818278 |
ccaagctgttggttattcccttgtgtatagtcagctatatcctttcgaaggacttcagaactacacttctggaattatacatcatgttcgtctcacaggt |
37818179 |
T |
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| Q |
416 |
atattaacactttgac |
431 |
Q |
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| T |
37818178 |
atattaacactttgac |
37818163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 196 - 431
Target Start/End: Complemental strand, 37810441 - 37810206
Alignment:
| Q |
196 |
atgatattgttagattacatttgcaggagaattccaaattggggagaatatagaaccgttagatcctgaaacagttgatagcatagttcaatatggaaga |
295 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37810441 |
atgacattgttgaattacatttgcaggagaattccaaattggggagaatatagaaccattagatcctgaaacagttggtagcatagttcaatatggaagg |
37810342 |
T |
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| Q |
296 |
tttggaaggtcaatgaatgtccaagctgttggttattcccttgtgtatagtcagctatatccttttgaaggacttcagaactatacttctggaattatac |
395 |
Q |
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| T |
37810341 |
tttggaaggtcaatgaatggccaagctgttggttattcccttgtgtatagtcagctatatccttttgaaggacttcagaactatacttctggaattatac |
37810242 |
T |
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| Q |
396 |
atcatgttcgtctcacaggtatattaacactttgac |
431 |
Q |
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| T |
37810241 |
atcatgttcgtctcacaggtatattaacactttgac |
37810206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 19905358 - 19905441
Alignment:
| Q |
332 |
tcccttgtgtatagtcagctatatccttttgaaggacttcagaactatacttctggaattatacatcatgttcgtctcacaggt |
415 |
Q |
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||||||||||| || ||||| |||||||||||||| |||||||| || ||||||||||| || ||||||||||| ||||||||| |
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| T |
19905358 |
tcccttgtgtacagccagctttatccttttgaaggtcttcagaattacacttctggaatcatccatcatgttcggctcacaggt |
19905441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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