View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16117_low_6 (Length: 428)
Name: NF16117_low_6
Description: NF16117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16117_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 411
Target Start/End: Original strand, 39007358 - 39007751
Alignment:
| Q |
20 |
ccaaacatgaaattcgtgtcgagtctcctaactatatcgttaaccacttacttacaatcaaatttggtagacgccttagatagactcagcttggaatcaa |
119 |
Q |
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|||||||||||||| ||||| ||||||||| |||||||||||||||||| |||||||||||| ||| ||||| |||||||||||||||||||| |||||| |
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| T |
39007358 |
ccaaacatgaaatttgtgtcaagtctcctagctatatcgttaaccacttgcttacaatcaaagttgatagacaccttagatagactcagcttgcaatcaa |
39007457 |
T |
|
| Q |
120 |
attcgatagatacattagatagactcatattgtcaaaccattttatcgc-tcttttaatctcattgcctctgcctcatgttgttgtggtactcccaagaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
39007458 |
gttcgatagatacattagatagactcatattgtcaaaccattttatcgcctcttttagtctcattgcctctgtttcatgttgttgtggtactcccaagaa |
39007557 |
T |
|
| Q |
219 |
ccaagttgggttttaacttgatgaactctctcagcttcctctgatacacattcatattc-atagcaactatgttccttgaatattgctgcatcgatattg |
317 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39007558 |
ccaagttgggttttaacttgatgaactctctcaaattcctctgatacacattcatattccatagcaactatgttccttgaatattgctgcatcgatattg |
39007657 |
T |
|
| Q |
318 |
cacttgacctctcctgcatctggcttgctccacctgtcgtggttacggcttgttgctccattggagttagtcgcttctactttcttgcaagttg |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39007658 |
cacttgacctctcctgcatctggcttgctccacctgtcgtggttacggcttgttgatccattggagttagtcgcttctactttcttgcaagttg |
39007751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 108 - 385
Target Start/End: Complemental strand, 8295037 - 8294758
Alignment:
| Q |
108 |
gcttggaatcaaattcgatagatacattagatagactcatattgtcaaaccattttatcgc-tcttttaatctcattgcctctgcctcatgttgttgtgg |
206 |
Q |
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||||| |||||| ||||||||| || ||||||||||||||| | ||| |||||||||||| ||||||| || | | ||||| || || ||| ||||||| |
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| T |
8295037 |
gcttgcaatcaagttcgatagacaccttagatagactcatacttccaagccattttatcgcctcttttagtcccctagcctccgcttcgtgtggttgtgg |
8294938 |
T |
|
| Q |
207 |
tactcccaagaaccaagttgggttttaacttgatgaactctctcagc-ttcctctgatacacattcatattc-atagcaactatgttccttgaatattgc |
304 |
Q |
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| |||| |||||||||| ||| |||| ||| |||||||| | ||| |||||||||| |||||| |||| ||| |||| |||||||||||| |||| |
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| T |
8294937 |
ttctcctaagaaccaaggtgg-ttttgcctttatgaactcaccgagccttcctctgatgtacattcccattccataacaaccatgttccttgaagattgt |
8294839 |
T |
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| Q |
305 |
tgcatcgatattgcacttgacctctcctgcatctggcttgctccacctgtcgtggttacggcttgttgctccattggagtt |
385 |
Q |
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| T |
8294838 |
tgcaacgatattgcacttgacctctcctgcattcggtttgctccactggtcatggttatggcttgttgctctgttggagtt |
8294758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 24588857 - 24588936
Alignment:
| Q |
253 |
cttcctctgatacacattcatattc-atagcaactatgttccttgaatattgctgcatcgatattgcacttgacctctcc |
331 |
Q |
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|||| |||||||||||||| || || ||| |||| ||| |||||||| |||| || ||||||||||||| |||||||||| |
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| T |
24588857 |
cttcgtctgatacacattcctactccataacaaccatggtccttgaagattgttgtatcgatattgcacctgacctctcc |
24588936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 24588662 - 24588746
Alignment:
| Q |
20 |
ccaaacatgaaattcgtgtcgagtctcctaactatatcgttaaccacttacttacaatcaaatttggtagacgccttagatagac |
104 |
Q |
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||||||||| |||| |||| ||||| |||| ||| |||| |||||||| ||| ||||||| || | ||||| |||||||||||| |
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| T |
24588662 |
ccaaacatggaattggtgttgagtcccctagttatgtcgtcaaccacttgcttgcaatcaagttcgatagacaccttagatagac |
24588746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 253 - 385
Target Start/End: Original strand, 33027764 - 33027897
Alignment:
| Q |
253 |
cttcctctgatacacattcatattc-atagcaactatgttccttgaatattgctgcatcgatattgcacttgacctctcctgcatctggcttgctccacc |
351 |
Q |
| |
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|||||||||| |||||||| ||||| ||| || | |||||| ||||| |||| |||||||||||||||||||||||| || |||| | |||||||||| |
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| T |
33027764 |
cttcctctgaaacacattcctattccatatcagccatgttctttgaagattgttgcatcgatattgcacttgacctcccccgcattcagtttgctccacc |
33027863 |
T |
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| Q |
352 |
tgtcgtggttacggcttgttgctccattggagtt |
385 |
Q |
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||| |||||| ||||||||||||| |||||||| |
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| T |
33027864 |
ggtcatggttatggcttgttgctcctttggagtt |
33027897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 35052005 - 35052048
Alignment:
| Q |
288 |
tgttccttgaatattgctgcatcgatattgcacttgacctctcc |
331 |
Q |
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||||||||||| |||||| |||| |||||||||||||||||||| |
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| T |
35052005 |
tgttccttgaagattgctacatcaatattgcacttgacctctcc |
35052048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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