View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16117_low_7 (Length: 425)
Name: NF16117_low_7
Description: NF16117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16117_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 377
Target Start/End: Complemental strand, 3324855 - 3324491
Alignment:
| Q |
11 |
cagagattcaactgactcaagaattaagannnnnnnnnaatgatctatatgatgtaagttttaccaagttggaaacaatatcacatgcttcacggatctt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
3324855 |
cagagattcaactgactcaagaattaagaaacttttttgatgatctatatgatgtaagttttaccaagttcgaaacaatatcacatgcatcacgaatctt |
3324756 |
T |
|
| Q |
111 |
agaaatttcctggagatcgcttttgattggattaggaagttgtagcatggccatcaacactcttggcaagaacatatcacaggttccttcgcattcttct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3324755 |
agaaatttcctggagatcgcttttgattggattaggaagttgcagcatggccatcaacactcttggcaagaacatatcacaggttccttcgcattcctct |
3324656 |
T |
|
| Q |
211 |
ctccttttctgatctttatgagaacatgggtcaattttccatttgcatttctttttctttaaagcaaaattttcaatagaagtgaaatgatgtttttcag |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3324655 |
ctccttttctgatctttatgagaacatgggtcaattttccatttgcatttctttttctttaaagcaaaattttcaatagaagtgaaatgatgtttttaag |
3324556 |
T |
|
| Q |
311 |
ataattatagcattttctttttcaacattccatatttgttctgcatccatacggacttcttttgtta |
377 |
Q |
| |
|
||||| || || ||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3324555 |
ataat--taacactttctttttcagcataccatctttgttctgcatccatacggacttcttttgtta |
3324491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 3262380 - 3262296
Alignment:
| Q |
116 |
tttcctggagatcgcttttgattggattaggaagttgtagcatggccatcaacactcttggcaagaacatatcacaggttccttc |
200 |
Q |
| |
|
|||||| ||||||||| |||||| || |||||||||| | | | |||||| |||||||| |||| |||||||||||||||||| |
|
|
| T |
3262380 |
tttcctcgagatcgctattgattagaataggaagttgccacgtagtcatcaaaactcttggaaagagcatatcacaggttccttc |
3262296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 12598838 - 12598804
Alignment:
| Q |
162 |
catcaacactcttggcaagaacatatcacaggttc |
196 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
12598838 |
catcgacactcttggcaagaacatatcacaggttc |
12598804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 20812662 - 20812710
Alignment:
| Q |
50 |
atgatctatatgatgtaagttttaccaagttggaaacaatatcacatgc |
98 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||| ||||||||| |
|
|
| T |
20812662 |
atgatctatatgatgtgaattttactgagttggaaacaacatcacatgc |
20812710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University