View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16117_low_8 (Length: 423)

Name: NF16117_low_8
Description: NF16117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16117_low_8
NF16117_low_8
[»] chr2 (17 HSPs)
chr2 (18-328)||(37297471-37297782)
chr2 (42-122)||(5902509-5902589)
chr2 (42-118)||(9595292-9595368)
chr2 (61-116)||(1494425-1494480)
chr2 (55-118)||(33256774-33256837)
chr2 (61-117)||(11307347-11307403)
chr2 (359-416)||(37297825-37297882)
chr2 (42-122)||(43456667-43456747)
chr2 (58-113)||(9878658-9878713)
chr2 (55-118)||(11063522-11063585)
chr2 (55-118)||(18884901-18884964)
chr2 (55-118)||(28677632-28677695)
chr2 (44-118)||(41293124-41293199)
chr2 (55-113)||(14299604-14299662)
chr2 (43-113)||(14316106-14316176)
chr2 (61-118)||(35378995-35379052)
chr2 (42-118)||(35993340-35993416)
[»] chr6 (16 HSPs)
chr6 (42-104)||(32976026-32976088)
chr6 (42-111)||(3775088-3775157)
chr6 (61-113)||(2034425-2034477)
chr6 (65-125)||(2735096-2735157)
chr6 (61-118)||(34939778-34939835)
chr6 (61-113)||(2027385-2027437)
chr6 (42-110)||(2732207-2732275)
chr6 (44-104)||(28776623-28776683)
chr6 (44-104)||(28798327-28798387)
chr6 (42-118)||(32386523-32386599)
chr6 (42-85)||(7931686-7931729)
chr6 (55-118)||(9027612-9027675)
chr6 (61-118)||(7148700-7148757)
chr6 (42-95)||(32917254-32917307)
chr6 (42-118)||(3155209-3155285)
chr6 (58-118)||(31624124-31624184)
[»] chr3 (8 HSPs)
chr3 (42-112)||(24624250-24624320)
chr3 (44-118)||(39602172-39602246)
chr3 (54-118)||(1217772-1217836)
chr3 (42-118)||(43115090-43115166)
chr3 (59-113)||(27290878-27290932)
chr3 (61-118)||(51206477-51206534)
chr3 (46-118)||(37273168-37273240)
chr3 (42-118)||(39311639-39311715)
[»] chr1 (9 HSPs)
chr1 (42-118)||(11639376-11639452)
chr1 (42-118)||(29723523-29723599)
chr1 (42-109)||(45327623-45327690)
chr1 (58-95)||(27145978-27146015)
chr1 (65-118)||(28689435-28689488)
chr1 (61-118)||(30815632-30815689)
chr1 (62-118)||(15687066-15687122)
chr1 (42-98)||(16980857-16980913)
chr1 (54-118)||(43338150-43338214)
[»] chr7 (6 HSPs)
chr7 (56-112)||(12834936-12834992)
chr7 (63-103)||(27626104-27626144)
chr7 (65-118)||(28691818-28691871)
chr7 (61-113)||(36598335-36598387)
chr7 (58-114)||(38496482-38496538)
chr7 (57-85)||(44178900-44178928)
[»] chr5 (13 HSPs)
chr5 (54-118)||(41957423-41957487)
chr5 (42-113)||(10907417-10907488)
chr5 (42-102)||(11457148-11457208)
chr5 (42-118)||(11700338-11700414)
chr5 (42-114)||(13264065-13264137)
chr5 (65-120)||(1619121-1619176)
chr5 (67-118)||(4659216-4659267)
chr5 (44-118)||(7985003-7985078)
chr5 (55-113)||(28586739-28586797)
chr5 (64-118)||(32897491-32897545)
chr5 (49-118)||(8177499-8177568)
chr5 (42-103)||(16380531-16380592)
chr5 (55-116)||(38766518-38766579)
[»] chr8 (6 HSPs)
chr8 (65-118)||(13459679-13459732)
chr8 (61-116)||(11569436-11569491)
chr8 (55-116)||(9540969-9541030)
chr8 (42-118)||(8558694-8558770)
chr8 (54-118)||(10062113-10062177)
chr8 (42-118)||(13000384-13000460)
[»] chr4 (7 HSPs)
chr4 (59-118)||(28614785-28614844)
chr4 (44-118)||(6987703-6987777)
chr4 (42-120)||(21043195-21043273)
chr4 (55-113)||(52754638-52754696)
chr4 (55-92)||(25717653-25717690)
chr4 (42-118)||(4798526-4798602)
chr4 (42-118)||(21157802-21157878)


Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 37297471 - 37297782
Alignment:
Q  18 gctataaccgatcccaattaagagacttgtgagaccatttggaagagcttatggaaacagcttatgacttttcca-taaactgttttcggcttattttca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||    
T  37297471 gctataaccgatcccaattaagagacttgtgagaccatttggaagagcttatggaaacagcttatgacttttcgaataaattgttttcggcttattttca 37297570  T
Q  117 tatgttgttatgttataaacgcttaattaagatgttgaattataaaagaaagcatttgagaaattaaccnnnnnnntgaggattaagaaattgaacctga 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||    
T  37297571 tatgttgttatgttataaacgcttaattaagatgttgaattataaaagaaagcatttgagaaattaaccaaaaaaatgaggattgagaaattgaacctga 37297670  T
Q  217 ataacatcttcaacacggtcattgcaacgatgagctttgggttcaggatgattctctcctgtaattccccatggactctctcgacgaggcactggtcttg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37297671 ataacatcttcaacacggtcattgcaacgatgagctttgggttcaggatgattctctcctgtaattccccatggactctctcgacgaggcactggtcttg 37297770  T
Q  317 tctcgctgctca 328  Q
    ||||||||||||    
T  37297771 tctcgctgctca 37297782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 5902509 - 5902589
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcatatgtt 122  Q
    |||||||||||  ||||||||| |||||| |||||||||||||| | | |||||||||||||| |||| |||| |||||||    
T  5902509 acttgtgagactgtttggaagaacttatgaaaacagcttatgacatgttcataaactgttttcagcttgtttttatatgtt 5902589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 9595368 - 9595292
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||||| ||||||||| |||||| ||||| ||||| |||||||| | ||||| |||| ||||| |||||||||||||    
T  9595368 acttgtaagaccatttagaagagtttatgaaaacatcttatgacatgtccatgaactattttcagcttattttcata 9595292  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 1494425 - 1494480
Alignment:
Q  61 agagcttatggaaacagcttatgacttttccataaactgttttcggcttattttca 116  Q
    |||||||||| |||||||||||||| | |||||||||||||||  |||||||||||    
T  1494425 agagcttatgaaaacagcttatgacatgtccataaactgtttttagcttattttca 1494480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 33256837 - 33256774
Alignment:
Q  55 tttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    ||||| |||||||||| |||||||||||||| | | ||||||||||| || |||||||||||||    
T  33256837 tttgggagagcttatgaaaacagcttatgacatgttcataaactgttctcagcttattttcata 33256774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 11307403 - 11307347
Alignment:
Q  61 agagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcat 117  Q
    ||||||||||||||| | ||||||||| ||||| | |||||||| ||||||||||||    
T  11307403 agagcttatggaaaccgattatgacttgtccatgagctgttttctgcttattttcat 11307347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 37297825 - 37297882
Alignment:
Q  359 ctctctcttttgtttgcttcgtccnnnnnnnctacactacactttctctacttctctg 416  Q
    ||||||||||||||||||||||||       || ||||||||||||||||||||||||    
T  37297825 ctctctcttttgtttgcttcgtccaaaaaaactccactacactttctctacttctctg 37297882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 43456667 - 43456747
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcatatgtt 122  Q
    |||||| ||||  |||| |||||||| || ||||| || ||||| | |||||||||||||||| |||||||| ||||||||    
T  43456667 acttgtaagactgtttgaaagagcttgtgaaaacaactcatgacatgtccataaactgttttcagcttatttccatatgtt 43456747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 9878658 - 9878713
Alignment:
Q  58 ggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattt 113  Q
    ||||||||||||||||||| |||||||| | |||||||  |||||||| |||||||    
T  9878658 ggaagagcttatggaaacaacttatgacatgtccataagttgttttcgacttattt 9878713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 11063585 - 11063522
Alignment:
Q  55 tttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    ||||||||||||||||||||||  ||||||| | |||||||  ||||||  |||||||||||||    
T  11063585 tttggaagagcttatggaaacatattatgacatgtccataagttgtttttagcttattttcata 11063522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 18884964 - 18884901
Alignment:
Q  55 tttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    ||||| ||||||||| ||||||||||||||| ||||||| | |||||||| | |||||| ||||    
T  18884964 tttgggagagcttatagaaacagcttatgacatttccattagctgttttcagattatttccata 18884901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 28677632 - 28677695
Alignment:
Q  55 tttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    ||||| ||| |||||| |||||||||||||| ||| |||||  |||||||||||||||| ||||    
T  28677632 tttgggagaacttatgaaaacagcttatgacattttcataagttgttttcggcttatttccata 28677695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 41293124 - 41293199
Alignment:
Q  44 ttgtgagaccatttggaagagcttatggaaacagcttatgacttttc-cataaactgttttcggcttattttcata 118  Q
    ||||||||| |||||| ||| |||||  |||||||||||||| |||| ||||| |||||||| |||||| ||||||    
T  41293124 ttgtgagactatttgggagaacttataaaaacagcttatgacatttcgcataagctgttttcagcttatattcata 41293199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 14299604 - 14299662
Alignment:
Q  55 tttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattt 113  Q
    |||||||||| ||||||||||| |||||||| | |||||| | ||||||| ||||||||    
T  14299604 tttggaagagtttatggaaacaacttatgacatatccatacattgttttcagcttattt 14299662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 14316106 - 14316176
Alignment:
Q  43 cttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattt 113  Q
    |||||||||| |||| | |||||||||||||||| |||||||| | |  |||| |||||||| ||||||||    
T  14316106 cttgtgagactattttggagagcttatggaaacaacttatgacatatgtataagctgttttcagcttattt 14316176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 35378995 - 35379052
Alignment:
Q  61 agagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||||||||| |||||||| ||||||| | |||||  ||||||| |||||||||||||    
T  35378995 agagcttatgaaaacagctgatgacttgttcataagttgttttcagcttattttcata 35379052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 35993340 - 35993416
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||||||| ||  ||||| |||||| ||  |||||| ||||||| | |||||||| ||||||| |||||||||||||    
T  35993340 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcata 35993416  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 32976088 - 32976026
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttc 104  Q
    |||||||||||  ||||||||||||||| ||||||||||||||| ||||||||| ||||||||    
T  32976088 acttgtgagactgtttggaagagcttatagaaacagcttatgacatttccataagctgttttc 32976026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 3775088 - 3775157
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttat 111  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||| | | |||||||||||||| ||||||    
T  3775088 acttgtgagactattcggaagagcttatagaaacagcttatgacatgtgcataaactgttttcagcttat 3775157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 2034425 - 2034477
Alignment:
Q  61 agagcttatggaaacagcttatgacttttccataaactgttttcggcttattt 113  Q
    |||| |||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  2034425 agagtttatggaaacagcttatgacatttccataagctgttttcagcttattt 2034477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 2735157 - 2735096
Alignment:
Q  65 cttatggaaacagcttatgac-ttttccataaactgttttcggcttattttcatatgttgtt 125  Q
    |||||| |||| ||||||||| |||| ||||| |||||||||||||||||||||| ||||||    
T  2735157 cttatgaaaacggcttatgacatttttcataagctgttttcggcttattttcataagttgtt 2735096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 34939835 - 34939778
Alignment:
Q  61 agagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||||||| |||||||||||||||| | |||||||| ||||||| |||||||| ||||    
T  34939835 agagcttacggaaacagcttatgacatgtccataaattgttttcagcttatttccata 34939778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 2027385 - 2027437
Alignment:
Q  61 agagcttatggaaacagcttatgacttttccataaactgttttcggcttattt 113  Q
    |||| ||||| |||||||||||||| ||||||||| |||||||| ||||||||    
T  2027385 agagtttatgaaaacagcttatgacatttccataagctgttttcagcttattt 2027437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 2732207 - 2732275
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggctta 110  Q
    |||||||||||  ||||||| ||||||||||||||||| ||||  | |||||||| ||||||| |||||    
T  2732207 acttgtgagactgtttggaaaagcttatggaaacagctaatgatctgtccataaattgttttcagctta 2732275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 28776683 - 28776623
Alignment:
Q  44 ttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttc 104  Q
    ||||||||| |||||| |||| ||| |||||||||||||||||| || |||| ||||||||    
T  28776683 ttgtgagactatttgggagagtttaaggaaacagcttatgacttgtctataagctgttttc 28776623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 28798387 - 28798327
Alignment:
Q  44 ttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttc 104  Q
    ||||||||| |||||| |||| ||| |||||||||||||||||| || |||| ||||||||    
T  28798387 ttgtgagactatttgggagagtttaaggaaacagcttatgacttgtctataagctgttttc 28798327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 32386523 - 32386599
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||||||||||| |||| ||||||||||||||| | ||||| || | |||| ||  ||||||| |||||||||||||    
T  32386523 acttgtgagaccgtttgaaagagcttatggaaatatcttataacatgtccacaacttgttttcagcttattttcata 32386599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 7931686 - 7931729
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgac 85  Q
    |||||||||||||||| |||||||||||| ||||| ||||||||    
T  7931686 acttgtgagaccatttagaagagcttatgaaaacaacttatgac 7931729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 9027675 - 9027612
Alignment:
Q  55 tttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||| ||||||||||||||| | |||||||| | |||||||  ||||||| |||||||||||||    
T  9027675 tttgaaagagcttatggaaataacttatgacatgtccataagttgttttcagcttattttcata 9027612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 7148757 - 7148700
Alignment:
Q  61 agagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||||||| ||||||| |||||||||| ||||||| || |||||  ||||||||||||    
T  7148757 agagcttacggaaacaacttatgacttgtccataagctattttcaacttattttcata 7148700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 32917307 - 32917254
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataa 95  Q
    |||||||||||  ||||| |||||||||||||||| |||||||| | |||||||    
T  32917307 acttgtgagactgtttgggagagcttatggaaacaacttatgacatgtccataa 32917254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 3155285 - 3155209
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    ||||| ||||||||||| ||||||||||  | ||| |||||||| | || |||| |||||||| |||||||| ||||    
T  3155285 acttgagagaccatttgaaagagcttatatacacaacttatgacatgtctataagctgttttcagcttatttccata 3155209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 31624184 - 31624124
Alignment:
Q  58 ggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||||| |||||| |||||||||||||| | | ||||| ||||||||  ||||||||||||    
T  31624184 ggaagaacttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcata 31624124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 24624320 - 24624250
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttatt 112  Q
    |||||| ||||  |||||||||||||||| |||||||||||||| | |||||||||||||||| |||||||    
T  24624320 acttgtaagactgtttggaagagcttatgaaaacagcttatgacatgtccataaactgttttcagcttatt 24624250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 39602172 - 39602246
Alignment:
Q  44 ttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    ||||||| | ||||||||||||||||| | |||||||||||| | | |||||| |||||||  ||||||||||||    
T  39602172 ttgtgaggctatttggaagagcttatgaagacagcttatgacatgttcataaattgttttcaacttattttcata 39602246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 1217772 - 1217836
Alignment:
Q  54 atttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    ||||||||||||||| |||||||||||||||| | |||||||  |||||||  |||| |||||||    
T  1217772 atttggaagagcttacggaaacagcttatgacatgtccataagttgttttcatcttactttcata 1217836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 43115166 - 43115090
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    ||||||||||   |||||||||| ||||||||||| |||||||| | |||||||  ||||||| |||||||| ||||    
T  43115166 acttgtgagattgtttggaagagtttatggaaacaacttatgacatgtccataacttgttttcagcttatttccata 43115090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 27290878 - 27290932
Alignment:
Q  59 gaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattt 113  Q
    |||||||||||| |||||||||||||| |  |||||| |||||||| ||||||||    
T  27290878 gaagagcttatgaaaacagcttatgacatgcccataagctgttttcagcttattt 27290932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 51206477 - 51206534
Alignment:
Q  61 agagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    ||||| ||||||||||||||||||| | |||| ||  ||||||| |||||||||||||    
T  51206477 agagcatatggaaacagcttatgacctatccaaaagttgttttcagcttattttcata 51206534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 37273240 - 37273168
Alignment:
Q  46 gtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||||||  ||||| |||||||||||||||| |||||||| | |||||||  |||||||  ||||||| ||||    
T  37273240 gtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccata 37273168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 39311639 - 39311715
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    ||||||||||| |||| | ||||||||||||||||| ||||||  |||||| ||| | |||||  ||||||| ||||    
T  39311639 acttgtgagactattttggagagcttatggaaacagtttatgatatttccacaaatttttttcatcttatttccata 39311715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 11639376 - 11639452
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||| |||||| |||| |||||||||||| |||||||||||||| | ||||||| |||||||  |||||||||||||    
T  11639376 acttttgagacaatttagaagagcttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcata 11639452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 29723599 - 29723523
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||||||| ||  |||| |||| || |||||||||||||||||| | ||||||||||||||||  ||||||| ||||    
T  29723599 acttgtgatacagtttgaaagaactaatggaaacagcttatgacatgtccataaactgttttcaacttatttacata 29723523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 45327690 - 45327623
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggctt 109  Q
    ||||||||||| | ||||  ||||||||||||||| |||||||| | |||||||| ||||||| ||||    
T  45327690 acttgtgagactagttgggggagcttatggaaacaacttatgacatgtccataaattgttttcagctt 45327623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 27146015 - 27145978
Alignment:
Q  58 ggaagagcttatggaaacagcttatgacttttccataa 95  Q
    |||||||||||||||||||||||||||| | |||||||    
T  27146015 ggaagagcttatggaaacagcttatgacatgtccataa 27145978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 28689435 - 28689488
Alignment:
Q  65 cttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||| |||||||||||||||| | |||||||  ||||||| |||||||||||||    
T  28689435 cttacggaaacagcttatgacatgtccataagttgttttcagcttattttcata 28689488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 30815632 - 30815689
Alignment:
Q  61 agagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||||||||  |||||||||||||| | | |||||| ||||||| |||||||||||||    
T  30815632 agagcttatataaacagcttatgacatgttcataaaatgttttcagcttattttcata 30815689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 15687066 - 15687122
Alignment:
Q  62 gagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||||||||||| || |||||||| | |||||||| ||||||| ||||||| |||||    
T  15687066 gagcttatggaatcaccttatgacatgtccataaattgttttcagcttattgtcata 15687122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 16980913 - 16980857
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaact 98  Q
    ||||||||||| |||||  |||||||||||||||| |||| ||| ||| ||||||||    
T  16980913 acttgtgagactatttgagagagcttatggaaacaacttacgacattttcataaact 16980857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 43338214 - 43338150
Alignment:
Q  54 atttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||| ||||| ||||||||||||||||||||| | | ||||| || ||||| || ||||||||||    
T  43338214 atttagaagaacttatggaaacagcttatgacatgttcataatctattttcagcctattttcata 43338150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 12834936 - 12834992
Alignment:
Q  56 ttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttatt 112  Q
    |||| |||| |||||||||||||||||||| | |||||||||||||||| |||||||    
T  12834936 ttggtagagattatggaaacagcttatgacatgtccataaactgttttcagcttatt 12834992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 27626104 - 27626144
Alignment:
Q  63 agcttatggaaacagcttatgacttttccataaactgtttt 103  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  27626104 agcttatggaaacagcttatgacatgtccataaactgtttt 27626144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 28691818 - 28691871
Alignment:
Q  65 cttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||||| |||||||||||||||| |||||||| |||| || | |||||||||||    
T  28691818 cttatgaaaacagcttatgacttgtccataaattgttatcagtttattttcata 28691871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 36598335 - 36598387
Alignment:
Q  61 agagcttatggaaacagcttatgacttttccataaactgttttcggcttattt 113  Q
    |||||||||||||||| |||||||| | | ||||| |||||||| ||||||||    
T  36598335 agagcttatggaaacatcttatgacatgttcataagctgttttcagcttattt 36598387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 38496482 - 38496538
Alignment:
Q  58 ggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttatttt 114  Q
    |||| |||||||||||||||||||| || | || |||||| ||||||||| ||||||    
T  38496482 ggaaaagcttatggaaacagcttataacatgtcaataaacagttttcggcctatttt 38496538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 85
Target Start/End: Original strand, 44178900 - 44178928
Alignment:
Q  57 tggaagagcttatggaaacagcttatgac 85  Q
    |||||||||||||||||||||||||||||    
T  44178900 tggaagagcttatggaaacagcttatgac 44178928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 41957423 - 41957487
Alignment:
Q  54 atttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    ||||||||||||||| |||||||||||||||| | |||||||  |||||||  ||||||||||||    
T  41957423 atttggaagagcttacggaaacagcttatgacatgtccataagttgttttcatcttattttcata 41957487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 10907488 - 10907417
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattt 113  Q
    |||||||||||  |||||||||||||||| ||||| |||||| | | || |||| |||||||||||||||||    
T  10907488 acttgtgagactgtttggaagagcttatgaaaacaacttatgtcatgtcaataagctgttttcggcttattt 10907417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 11457208 - 11457148
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttt 102  Q
    |||||||||||  ||| |||||||||||||||||| |||||||| | ||||||| ||||||    
T  11457208 acttgtgagactgttttgaagagcttatggaaacaacttatgacatgtccataagctgttt 11457148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 11700338 - 11700414
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    ||||||||||| |||  | |||| ||||||||||| |||||||| | ||||||| |||||||| | |||||||||||    
T  11700338 acttgtgagactattgaggagagtttatggaaacaacttatgacatgtccataagctgttttcagattattttcata 11700414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 13264065 - 13264137
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttatttt 114  Q
    ||||| |||||  |||||||||| |||||||||||||||||| | | | ||||| |||||||| |||||||||    
T  13264065 acttgcgagactgtttggaagagtttatggaaacagcttatgccatattcataagctgttttcagcttatttt 13264137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 1619176 - 1619121
Alignment:
Q  65 cttatggaaacagcttatgacttttccataaactgttttcggcttattttcatatg 120  Q
    |||||| |||||||||||| | ||| |||||||||||||| ||| |||||||||||    
T  1619176 cttatgaaaacagcttatgccatttacataaactgttttcagctgattttcatatg 1619121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 4659267 - 4659216
Alignment:
Q  67 tatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||| |||||||||||||   |||||||||||||||||||||||||| ||||    
T  4659267 tatgaaaacagcttatgaaaattccataaactgttttcggcttatttccata 4659216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 7985078 - 7985003
Alignment:
Q  44 ttgtgagaccatttggaagagcttatggaaacagcttatgacttt-tccataaactgttttcggcttattttcata 118  Q
    ||||||||| |||||| |||||||| | ||||||||| |||| || | ||||| |||||||| |||||||||||||    
T  7985078 ttgtgagactatttgggagagcttaagaaaacagcttgtgacgttgttcataagctgttttcagcttattttcata 7985003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 28586739 - 28586797
Alignment:
Q  55 tttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattt 113  Q
    ||||| |||||||||||||| |||||||||| | ||| ||| |||||||| ||||||||    
T  28586739 tttgggagagcttatggaaatagcttatgacatatccgtaagctgttttcagcttattt 28586797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 32897545 - 32897491
Alignment:
Q  64 gcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    ||||||||||||| |||||||  ||| ||||| |||||||| |||||||||||||    
T  32897545 gcttatggaaacaacttatgatattttcataacctgttttctgcttattttcata 32897491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 8177499 - 8177568
Alignment:
Q  49 agaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    ||||| || ||||||||| |||||||||||||||||  | |||||||  ||||||| | |||||||||||    
T  8177499 agaccgttcggaagagctcatggaaacagcttatgatatgtccataagttgttttcaggttattttcata 8177568  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 16380531 - 16380592
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgtttt 103  Q
    |||||||| || ||||| ||||| |||||||||||||||| ||| | ||||||| |||||||    
T  16380531 acttgtgaaactatttgcaagagtttatggaaacagcttacgacatgtccataagctgtttt 16380592  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 38766518 - 38766579
Alignment:
Q  55 tttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttca 116  Q
    ||||||||| |||||||||||| ||||||||   |||||||  |||||||| ||||||||||    
T  38766518 tttggaagaacttatggaaacaacttatgacacgtccataagttgttttcgacttattttca 38766579  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 13459732 - 13459679
Alignment:
Q  65 cttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||||| |||||||||||||| ||| |||||||||||||| || ||||||||||    
T  13459732 cttatgaaaacagcttatgacattttcataaactgttttcagcctattttcata 13459679  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 11569436 - 11569491
Alignment:
Q  61 agagcttatggaaacagcttatgacttttccataaactgttttcggcttattttca 116  Q
    ||||||||||||||||||||||||| | | |||||  ||||||| |||||||||||    
T  11569436 agagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttca 11569491  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 9540969 - 9541030
Alignment:
Q  55 tttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttca 116  Q
    ||||| |||||||||||||||| |||||||| | |||||||  ||| ||| |||||||||||    
T  9540969 tttgggagagcttatggaaacatcttatgacatgtccataatttgtgttcagcttattttca 9541030  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 8558770 - 8558694
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    ||||||||| |  ||||| |||||||||||||||| ||| |||| | ||||| |||| ||||| | |||||||||||    
T  8558770 acttgtgaggctgtttgggagagcttatggaaacaacttgtgacatgtccatcaactattttcagattattttcata 8558694  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 10062113 - 10062177
Alignment:
Q  54 atttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||||| ||||||||||| ||||  ||||||| |||| |||| |||||||| |||||||| ||||    
T  10062113 atttgggagagcttatggcaacattttatgacatttctataagctgttttcagcttatttgcata 10062177  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 13000384 - 13000460
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    ||||||||||| ||||| ||||| |||||| |||| |||||||| | |||| ||  ||||||| |||||||| ||||    
T  13000384 acttgtgagactatttgcaagagtttatggtaacaacttatgacatgtccacaagttgttttcagcttatttccata 13000460  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 28614785 - 28614844
Alignment:
Q  59 gaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    ||||||||||||||||||  ||||||| | ||||||| || ||||| |||||||||||||    
T  28614785 gaagagcttatggaaacaatttatgacatatccataagctcttttcagcttattttcata 28614844  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 6987703 - 6987777
Alignment:
Q  44 ttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||||||||  ||||| |||||||||||| ||| |||||||| | |||||||||| |||||  ||||||| ||||    
T  6987703 ttgtgagactgtttgggagagcttatggatacaacttatgacatgtccataaactattttcaacttatttccata 6987777  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 21043195 - 21043273
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcatatg 120  Q
    |||||||||||  ||||| |||| ||||||||||||||||||||   | ||||| |||||||| |  ||||||||||||    
T  21043195 acttgtgagactgtttgggagaggttatggaaacagcttatgacacgttcataagctgttttcagtgtattttcatatg 21043273  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 52754696 - 52754638
Alignment:
Q  55 tttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattt 113  Q
    |||||||||||||||| |||||| ||||||| | ||||||| ||| |||| ||||||||    
T  52754696 tttggaagagcttatgaaaacagtttatgacgtgtccataagctgctttcagcttattt 52754638  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 25717690 - 25717653
Alignment:
Q  55 tttggaagagcttatggaaacagcttatgacttttcca 92  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  25717690 tttggaagagcttatggaaacaacttatgacttgtcca 25717653  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 4798526 - 4798602
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||||||||||  || |||||||||||||||||| |||| |||| | | ||||| |||||||  |||||||| ||||    
T  4798526 acttgtgagactgttaggaagagcttatggaaacggcttctgacatgtacataagctgttttgagcttatttgcata 4798602  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 21157878 - 21157802
Alignment:
Q  42 acttgtgagaccatttggaagagcttatggaaacagcttatgacttttccataaactgttttcggcttattttcata 118  Q
    |||||| ||||  ||||||||||||||  ||||||||||||||| ||| || || |||||||  |||||||| ||||    
T  21157878 acttgtaagactgtttggaagagcttacagaaacagcttatgacatttacaaaagctgtttttagcttatttccata 21157802  T

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