View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16118_high_3 (Length: 391)
Name: NF16118_high_3
Description: NF16118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16118_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 187 - 375
Target Start/End: Original strand, 37917392 - 37917580
Alignment:
| Q |
187 |
taaataaacaaccgccatgaccggaaacgcatcatctccgacaccatcaccgtcaccggcgcctttatcctccccaacgatctcgcgctcgataacgcaa |
286 |
Q |
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| T |
37917392 |
taaataaacaaccgccatgaccggaaacgcatcatctccgacaccgtcaccgtcaccggcgccgttatcctccccaacgatctcgcgctcgataacgcaa |
37917491 |
T |
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| Q |
287 |
acggttaacggttcgcacaaattcttgatccaagggtactcgctcgcgaagggaatgggagttggaaaacacattgcaagcgatgtttt |
375 |
Q |
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| T |
37917492 |
acggttaacggttcgcacaaattcttgatccaagggtactcgcttgcgaagggaatgggggttggaaaacacattgcaagcgatgtttt |
37917580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 37917206 - 37917324
Alignment:
| Q |
1 |
tcatgatatagcccacagaatttcactttctagaaacttcagggacaaacacgtcatttcaaaccaaaggctacattactcaaaaccgtgacgtagccaa |
100 |
Q |
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| T |
37917206 |
tcatgatatagcccacagaatttcactttctagaaacttcagggacaaacacgtaatttcaaaccaaaggctacattactcaaaaccgtgacgtagccaa |
37917305 |
T |
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| Q |
101 |
aaaccatcgtcatattccg |
119 |
Q |
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| T |
37917306 |
aaaccatcgtcatattccg |
37917324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 375
Target Start/End: Original strand, 1988452 - 1988521
Alignment:
| Q |
306 |
aattcttgatccaagggtactcgctcgcgaagggaatgggagttggaaaacacattgcaagcgatgtttt |
375 |
Q |
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| T |
1988452 |
aattcttgatcgaaggctactcactgaccaagggaatgggaatcggaaaacacattgcaagcgaagtttt |
1988521 |
T |
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