View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16118_high_5 (Length: 346)
Name: NF16118_high_5
Description: NF16118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16118_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 45362835 - 45363087
Alignment:
| Q |
1 |
aaggtggagcaaaaacgatgccaccagcaagtataatgacgaggctgatattgataatggtttggagaaaacttatcagaaacccaaacacatattcgag |
100 |
Q |
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| T |
45362835 |
aaggtggggcaaaaacgatgccaccagcaagtataatgacgaggctgatattgataatggtttggagaaaacttatcagaaacccaaacacatattcgag |
45362934 |
T |
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| Q |
101 |
cattatcggcctaacttggtcactcatttcattcaggtggaatattgaaatgcctgttatcatagaaaagtctatttccatattgtcagatgcagggctt |
200 |
Q |
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| T |
45362935 |
cattatcggcctaacttggtcactcatttcattcaggtggaatattgaaatgcctgttatcatagcaaagtctatttccatattgtcggatgcagggctt |
45363034 |
T |
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| Q |
201 |
ggcatggccatgtacagtcttggttagtattcaatcaaactcaatggtgttta |
253 |
Q |
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| T |
45363035 |
ggcatggccatgttcagtcttggttagtattcaataaaactcaatggtgttta |
45363087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 284 - 330
Target Start/End: Original strand, 45363237 - 45363283
Alignment:
| Q |
284 |
tttgctccttttcctttatgattctgttcatggcaggtctgttcatg |
330 |
Q |
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| T |
45363237 |
tttgctccttttcctttatgattctgttcatggcaggtctgttcatg |
45363283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 25040218 - 25040338
Alignment:
| Q |
18 |
atgccaccagcaagtataatgacgaggctgatattgataatggtttggagaaaacttatcagaaacccaaacacatattcgagcattatcggcctaactt |
117 |
Q |
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| T |
25040218 |
atgccaccagctagtgtgatgacaaggcttatattgattatggtttggagaaaacttatcagaaatccaaacacttattctagcttaattggtctcactt |
25040317 |
T |
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| Q |
118 |
ggtcactcatttcattcaggt |
138 |
Q |
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|||| | |||||||||||| |
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| T |
25040318 |
ggtctttggtttcattcaggt |
25040338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 25040700 - 25040782
Alignment:
| Q |
142 |
atattgaaatgcctgttatcatagaaaagtctatttccatattgtcagatgcagggcttggcatggccatgtacagtcttggt |
224 |
Q |
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||||||||||||||| || |||| ||||||||||||||| ||||||||||||| ||||||||||| |||| |||||||||| |
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| T |
25040700 |
atattgaaatgcctgccattatagcaaagtctatttccattctgtcagatgcaggacttggcatggctatgttcagtcttggt |
25040782 |
T |
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