View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16118_low_10 (Length: 269)
Name: NF16118_low_10
Description: NF16118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16118_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 28611718 - 28611556
Alignment:
| Q |
18 |
agacaaccaattccaatatctaagagtatatagacattgnnnnnnngatgatgtgcaatttcataattgttcccacacaagctgctatatgaatcaatat |
117 |
Q |
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| T |
28611718 |
agacaaccaattc-aatatctaagagtatatagacattgaaaaaaagatgatgtgcaatttcataattgttcccacacaagctgctacatgaatcaatat |
28611620 |
T |
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| Q |
118 |
taaaacctctcttaatcaagttatcatcaatggcaaacacattgcgcataagtctctaaatcac |
181 |
Q |
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| T |
28611619 |
taaaacctctcttaatcaagttatcatcaatggcaaacacattgcgcataagtctctaaatcac |
28611556 |
T |
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Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 28611509 - 28611435
Alignment:
| Q |
179 |
cacagtagatcaagaagaactagattatgagtatggccaaaataatcatctttaaaagtaggagaacccaaattt |
253 |
Q |
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| T |
28611509 |
cacagtagatcaagaagaactagattatgagtatggccaaaataatcatctttaaaagtaggagaacccaaattt |
28611435 |
T |
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