View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16118_low_12 (Length: 242)
Name: NF16118_low_12
Description: NF16118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16118_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 48 - 231
Target Start/End: Complemental strand, 45547921 - 45547738
Alignment:
| Q |
48 |
cgtatacttgcgtgtaccaagataattactccnnnnnnnggataattattaattaattgattaatatactataaatataagctcctagtctaagattcca |
147 |
Q |
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| T |
45547921 |
cgtatagttgcgtgtaccaagataattactccaaaaaaaggataattattaattaattgattaatatactataaatataagctcctagtctaagattcca |
45547822 |
T |
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| Q |
148 |
tttcattctatccagcagcaacgatgaaaatggctccaacaattctgcccctggtcaccttatttttagctttctctgtttctt |
231 |
Q |
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| T |
45547821 |
tttcattctatccagcagcaacgatgaaaatggctccaacaattctgcccctggtcaccttatttttagctttctctgtttctt |
45547738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 45540638 - 45540590
Alignment:
| Q |
174 |
aaaatggctccaacaattctgcccctggtcaccttatttttagctttct |
222 |
Q |
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| T |
45540638 |
aaaatgactccaacaattctgtccctggctaccttatttttagttttct |
45540590 |
T |
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