View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16118_low_2 (Length: 677)

Name: NF16118_low_2
Description: NF16118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16118_low_2
NF16118_low_2
[»] chr5 (1 HSPs)
chr5 (8-667)||(3713186-3713841)


Alignment Details
Target: chr5 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 8 - 667
Target Start/End: Complemental strand, 3713841 - 3713186
Alignment:
Q  8 gacatcatcaaatcttataaaacaatcgtaaaatgattatcaacgacaccgttattaagaagaacttttcctccagcaactttataaatgtgaagttgaa 107  Q
    |||| |||||||||| |||||| ||| ||||||||||||||||||||||  ||||||| ||||||||||||| || | ||||||||||||| ||||||||    
T  3713841 gacaacatcaaatctcataaaataattgtaaaatgattatcaacgacactattattaataagaacttttccttcaacgactttataaatgtaaagttgaa 3713742  T
Q  108 tttgatcaaattagggtattctactattatttttgtaaaagttgcactttagactttcaatgaaatcataatatcatcataatttcttaacttaccgtaa 207  Q
    |||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  3713741 tttggtcaaattagggtatgctactattatttttataaaagttgcactttagactttcaatgaaatcataatatcatcataatttcaaaacttaccgtaa 3713642  T
Q  208 cttcaaacatgcactaagtagcctggtcggtaaataaagacatcgaacaactacaattttggagacagatgaattttgcagatcatatatacttgatgct 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||    
T  3713641 cttcaaacatgcactaagtagcctggtcggtaaataaagacatcgaacaactacaattttggagacagatgaattttgcagatcata----cttgatgct 3713546  T
Q  308 aatttgctgaaaatcttaattccgtatcagttggttcagttatagtatatcccttatggtagggatggtcaatgagatgtccctagtgtttaaaaatgat 407  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3713545 aatttgctgaaaatcttaattccctatcagttggttcagttatagtatatcccttatggtagggatggtcaatgagatgtccctagtgtttaaaaatgat 3713446  T
Q  408 ctgaaaatacgggttggggagacaaatgtggacccttgatatcttcagcttcgtttcaaggttcatctttccaaacacctgcatgttctcttaaagatcc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3713445 ctgaaaatacgggttggggagacaaatgtggacccttgatatcttcagcttcgtttcaaggttcatctttccaaacacctgcatgttctcttaaagatcc 3713346  T
Q  508 ccttctatcccatacaaaacctacatttaatgcaccttctattctaacattacatataactgaacctagacattcatacaaacattgagtctttattctt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3713345 ccttctatcccatacaaaacctacatttaatgcaccttctattctaacattacatataactgaacctagacattcatacaaacattgagtctttattatt 3713246  T
Q  608 gttctgcattttatctcaacatggcttcacttcctcttcttctgctcctcatcctctgtg 667  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3713245 gttctgcattttatctcaacatggcttctcttcctcttcttctgctcctcatcctctgtg 3713186  T

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